Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89052997

Identifier: 89052997

GI number: 89052997

Start: 501842

End: 502318

Strand: Reverse

Name: 89052997

Synonym: Jann_0506

Alternate gene names: NA

Gene position: 502318-501842 (Counterclockwise)

Preceding gene: 89052998

Following gene: 89052996

Centisome position: 11.63

GC content: 62.26

Gene sequence:

>477_bases
ATGCCAACACCCTTCGACCCGCTCCTCGTCCTGTCCCGGCCGCTGATGGCCAATCTCTCGACGATCACGCATCACGGCGA
GCCGCGCAATGCGCCGGTCTGGTTCGCCTGGGAAGACGACGCGCTCTGGATGTTGTCCGATGTGACTTCCAGCAGCCCGC
ACCGCATCGCGCGCAATCCCAAGGTCGCCGTTGAGATCGTCGATTATGACAATACCGAAGGCATTCTGCGCCACCTCGGT
CTGCGCGGGGACGCCACGGTCGAGCCGATGAACCCTGACCTCTTCCGCCGTCTGCTGCGTCGCTATCTGGGGCCGGAGGA
TACGCAAAATCAATGGTTTATCGAGAATATCGCCCGCATCGACGACCCTAATGGCCGCCTCATTCGGCTGGAGCCGACCT
CCATATTCACCAACGACGTCAGCTTCTTCCGAACCGGCCCGGCCTTGGCGACAGCGACGGCGCGCCAATCCACTTGA

Upstream 100 bases:

>100_bases
TCGCATCGAGACCGTCGGATTGCACCGCGTCATTGACGCATGCGCCTCGTCGGTGCCCACAAATTGATATACCATTGATA
TACCCTAGTGGAGCAAAATC

Downstream 100 bases:

>100_bases
CTTGGGCAACGTCGAGGCGCACGCTATCCGTAACCTAAATTACGGCACCCTATGAACGGACCGCACGCTATGATCACCAC
CCAGTTCTTGCTTACTGCAC

Product: pyridoxamine 5'-phosphate oxidase-like FMN-binding protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MPTPFDPLLVLSRPLMANLSTITHHGEPRNAPVWFAWEDDALWMLSDVTSSSPHRIARNPKVAVEIVDYDNTEGILRHLG
LRGDATVEPMNPDLFRRLLRRYLGPEDTQNQWFIENIARIDDPNGRLIRLEPTSIFTNDVSFFRTGPALATATARQST

Sequences:

>Translated_158_residues
MPTPFDPLLVLSRPLMANLSTITHHGEPRNAPVWFAWEDDALWMLSDVTSSSPHRIARNPKVAVEIVDYDNTEGILRHLG
LRGDATVEPMNPDLFRRLLRRYLGPEDTQNQWFIENIARIDDPNGRLIRLEPTSIFTNDVSFFRTGPALATATARQST
>Mature_157_residues
PTPFDPLLVLSRPLMANLSTITHHGEPRNAPVWFAWEDDALWMLSDVTSSSPHRIARNPKVAVEIVDYDNTEGILRHLGL
RGDATVEPMNPDLFRRLLRRYLGPEDTQNQWFIENIARIDDPNGRLIRLEPTSIFTNDVSFFRTGPALATATARQST

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17935; Mature: 17803

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTPFDPLLVLSRPLMANLSTITHHGEPRNAPVWFAWEDDALWMLSDVTSSSPHRIARNP
CCCCCCHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEECCCCCCCCEECCCC
KVAVEIVDYDNTEGILRHLGLRGDATVEPMNPDLFRRLLRRYLGPEDTQNQWFIENIARI
CEEEEEEECCCHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHC
DDPNGRLIRLEPTSIFTNDVSFFRTGPALATATARQST
CCCCCCEEEEECCEEEECCCCEEECCCCCEECCCCCCC
>Mature Secondary Structure 
PTPFDPLLVLSRPLMANLSTITHHGEPRNAPVWFAWEDDALWMLSDVTSSSPHRIARNP
CCCCCHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEECCCCCCCCEECCCC
KVAVEIVDYDNTEGILRHLGLRGDATVEPMNPDLFRRLLRRYLGPEDTQNQWFIENIARI
CEEEEEEECCCHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHC
DDPNGRLIRLEPTSIFTNDVSFFRTGPALATATARQST
CCCCCCEEEEECCEEEECCCCEEECCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA