| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89052955
Identifier: 89052955
GI number: 89052955
Start: 463816
End: 464697
Strand: Direct
Name: 89052955
Synonym: Jann_0464
Alternate gene names: NA
Gene position: 463816-464697 (Clockwise)
Preceding gene: 89052954
Following gene: 89052957
Centisome position: 10.74
GC content: 64.85
Gene sequence:
>882_bases ATGACGGCGCGCAGCGTGGGGTTCGGGCTGCTCCTGGCGGCGTTCGGCACGGTGGTACTGACGCCAGACGCGATGTTGAT GCGACTCTCTGGTATGGACGGTGTGCAGATGTTGGGCTGGCGCTCGACCCTCATGGGATGCGTTTTGATCGCCGCGTGGG CGGGCAGTCGGGTGGGGCAGTGGCGCGCGGATGCGGCGCTGATCTTCTCGGGCGGCGGTCTCGCGATTGCGCTGTGCCAG GGGGTGAACGGCGCCTTGTTCACCTTCGGGATCGTCGGTGCGCCGGTGACGATTGTGCTTCTGGGCGTGGCGACTGTGCC GATTTTCGCAGCGATCTTTTCCTGGACCTTGATGGGGGAAGCGACGGGACGGGCCACCTGGGTGACGATTGTTGTCGTGC TGGCGGGCATCACGATTGCCGTCTTCGGCAAAGGCGATGGCGGAGTAGAGGCGGGGGCGATCAAGGGCGCGCTTTACGGG CTGGGGGTCGCGATATGTTTGGCGCTGTCGTTTGTCTTGATCCGGCGAATGGGCGACGTGCCGATTTTGCCGACCGTGGG GCTTGGCGCGTTGGGCGCAGGCGCAGTGGGGATCGCGCTGACTGGTTCCGACCTGATGGGCGGAGACGTGGTCCTCTGGC CGATCCTGCTGACCGGGGCGGTGGTCTTGCCGGTCAGTTTCTTCTGCCTGTCGCTGGCATCACGCTACACTGCGGCGGCG AATGTGAGCCTTTTGTTGCTGTTGGAAACCGTGCTGGGACCGCTGTGGGTCTGGCTTGCGGTCGGCGAGGCCCCCACGCC AATGATGCTTGGCGGTGGGGCCATCGTTGTGGCCAGCCTATCGGTGTATCTGGTCCACCAAAGGCTTACTGCAGGTCGCT GA
Upstream 100 bases:
>100_bases AGCCAGCGCATCTGGACGCGATGTTGCAGGAAGGTGACCTGGAAGAGGGCTGGATCCTCGGCCTCGGCCATGAGGCGGCG CTGATCGCGGGGTTAGACCC
Downstream 100 bases:
>100_bases ACGCCGCCTTCATGCGCGTCACGGCATCTTCAATCACGGCACGGGGCGCGGCGATGTTGAAGCGCAGGAAGCTGTCACCC CCTTTGCCGAAGGTGGGCCC
Product: membrane protein
Products: NA
Alternate protein names: Integral Membrane; Permease Protein
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MTARSVGFGLLLAAFGTVVLTPDAMLMRLSGMDGVQMLGWRSTLMGCVLIAAWAGSRVGQWRADAALIFSGGGLAIALCQ GVNGALFTFGIVGAPVTIVLLGVATVPIFAAIFSWTLMGEATGRATWVTIVVVLAGITIAVFGKGDGGVEAGAIKGALYG LGVAICLALSFVLIRRMGDVPILPTVGLGALGAGAVGIALTGSDLMGGDVVLWPILLTGAVVLPVSFFCLSLASRYTAAA NVSLLLLLETVLGPLWVWLAVGEAPTPMMLGGGAIVVASLSVYLVHQRLTAGR
Sequences:
>Translated_293_residues MTARSVGFGLLLAAFGTVVLTPDAMLMRLSGMDGVQMLGWRSTLMGCVLIAAWAGSRVGQWRADAALIFSGGGLAIALCQ GVNGALFTFGIVGAPVTIVLLGVATVPIFAAIFSWTLMGEATGRATWVTIVVVLAGITIAVFGKGDGGVEAGAIKGALYG LGVAICLALSFVLIRRMGDVPILPTVGLGALGAGAVGIALTGSDLMGGDVVLWPILLTGAVVLPVSFFCLSLASRYTAAA NVSLLLLLETVLGPLWVWLAVGEAPTPMMLGGGAIVVASLSVYLVHQRLTAGR >Mature_292_residues TARSVGFGLLLAAFGTVVLTPDAMLMRLSGMDGVQMLGWRSTLMGCVLIAAWAGSRVGQWRADAALIFSGGGLAIALCQG VNGALFTFGIVGAPVTIVLLGVATVPIFAAIFSWTLMGEATGRATWVTIVVVLAGITIAVFGKGDGGVEAGAIKGALYGL GVAICLALSFVLIRRMGDVPILPTVGLGALGAGAVGIALTGSDLMGGDVVLWPILLTGAVVLPVSFFCLSLASRYTAAAN VSLLLLLETVLGPLWVWLAVGEAPTPMMLGGGAIVVASLSVYLVHQRLTAGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29696; Mature: 29565
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTARSVGFGLLLAAFGTVVLTPDAMLMRLSGMDGVQMLGWRSTLMGCVLIAAWAGSRVGQ CCCCHHHHHHHHHHHCCEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC WRADAALIFSGGGLAIALCQGVNGALFTFGIVGAPVTIVLLGVATVPIFAAIFSWTLMGE CCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ATGRATWVTIVVVLAGITIAVFGKGDGGVEAGAIKGALYGLGVAICLALSFVLIRRMGDV CCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PILPTVGLGALGAGAVGIALTGSDLMGGDVVLWPILLTGAVVLPVSFFCLSLASRYTAAA CCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NVSLLLLLETVLGPLWVWLAVGEAPTPMMLGGGAIVVASLSVYLVHQRLTAGR CHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TARSVGFGLLLAAFGTVVLTPDAMLMRLSGMDGVQMLGWRSTLMGCVLIAAWAGSRVGQ CCCHHHHHHHHHHHCCEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC WRADAALIFSGGGLAIALCQGVNGALFTFGIVGAPVTIVLLGVATVPIFAAIFSWTLMGE CCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ATGRATWVTIVVVLAGITIAVFGKGDGGVEAGAIKGALYGLGVAICLALSFVLIRRMGDV CCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PILPTVGLGALGAGAVGIALTGSDLMGGDVVLWPILLTGAVVLPVSFFCLSLASRYTAAA CCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NVSLLLLLETVLGPLWVWLAVGEAPTPMMLGGGAIVVASLSVYLVHQRLTAGR CHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA