Click here to switch to the map view.

The map label for this gene is ycaR [C]

Identifier: 89052915

GI number: 89052915

Start: 426965

End: 427165

Strand: Direct

Name: ycaR [C]

Synonym: Jann_0424

Alternate gene names: 89052915

Gene position: 426965-427165 (Clockwise)

Preceding gene: 89052914

Following gene: 89052917

Centisome position: 9.89

GC content: 61.69

Gene sequence:

>201_bases
ATGAGCGACGGGGACACGAACGGTCCTACAGGGCCGATTGACCGTCGCATGCTGGAGGCGCTCGTTTGCCCCATGACCCA
GGCGCCGCTGAGCTACGATGCCGAAAAGCAGGAGCTGATCTCCAAGGCGGCACATCTGGCCTACCCGATCCGGGGTGGGA
TCCCGATCATGCTGGAAGAAGAAGCCCGCAAGCTGGATTAA

Upstream 100 bases:

>100_bases
AGGCGTTGCTGGAAGCGCCGTCGCTGAGTACGCGGCGAGAGACTTTGGTGACTTTGCTGGAATTCGCGCTGGCCTCCGGA
ACCGATGAAGAGCGGATGCA

Downstream 100 bases:

>100_bases
GCGGCGGGGCGGATCATGAGATGACCTCCGGGTGTGGATATCGCCCTCAGTCGACAGGATCTGCGACTGGGCGACGGACC
GGCACCCCTCATTTTCGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 65

Protein sequence:

>66_residues
MSDGDTNGPTGPIDRRMLEALVCPMTQAPLSYDAEKQELISKAAHLAYPIRGGIPIMLEEEARKLD

Sequences:

>Translated_66_residues
MSDGDTNGPTGPIDRRMLEALVCPMTQAPLSYDAEKQELISKAAHLAYPIRGGIPIMLEEEARKLD
>Mature_65_residues
SDGDTNGPTGPIDRRMLEALVCPMTQAPLSYDAEKQELISKAAHLAYPIRGGIPIMLEEEARKLD

Specific function: Unknown

COG id: COG2835

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0434 family

Homologues:

Organism=Escherichia coli, GI1787146, Length=53, Percent_Identity=52.8301886792453, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y424_JANSC (Q28VC1)

Other databases:

- EMBL:   CP000264
- RefSeq:   YP_508366.1
- ProteinModelPortal:   Q28VC1
- SMR:   Q28VC1
- STRING:   Q28VC1
- GeneID:   3932865
- GenomeReviews:   CP000264_GR
- KEGG:   jan:Jann_0424
- eggNOG:   COG2835
- HOGENOM:   HBG713593
- OMA:   MKISTSL
- PhylomeDB:   Q28VC1
- BioCyc:   JSP290400:JANN_0424-MONOMER
- HAMAP:   MF_01187
- InterPro:   IPR005651

Pfam domain/function: PF03966 Trm112p

EC number: NA

Molecular weight: Translated: 7226; Mature: 7095

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDGDTNGPTGPIDRRMLEALVCPMTQAPLSYDAEKQELISKAAHLAYPIRGGIPIMLEE
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECC
EARKLD
CHHCCC
>Mature Secondary Structure 
SDGDTNGPTGPIDRRMLEALVCPMTQAPLSYDAEKQELISKAAHLAYPIRGGIPIMLEE
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECC
EARKLD
CHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA