Click here to switch to the map view.

The map label for this gene is ycfD [C]

Identifier: 89052876

GI number: 89052876

Start: 389675

End: 390853

Strand: Reverse

Name: ycfD [C]

Synonym: Jann_0385

Alternate gene names: 89052876

Gene position: 390853-389675 (Counterclockwise)

Preceding gene: 89052878

Following gene: 89052867

Centisome position: 9.05

GC content: 62.26

Gene sequence:

>1179_bases
ATGACGAACACATTCAGCTTCGATTGGGCGATTGCGCCTGAAACCCCTGACACCTTCTTTGCCGAGTATTTCGAGAAGAA
GCCGATGCTGATCAAGCGCGGGCAGCCGGGGTATTTCTCCGATCTGCTCAGCTATGGGGAGATTGACCGCGTCGTCTCGA
CGATGGGTCTGCATGTGCCCGAGATTAACGTGACCCGGGCGGACGGCAATATCACACCCGCCGATTTTGCCTATGAGACG
GGACAGATTGATCCAGTGCGGGTGAACCAGCTGCACGCCGATGGTGCGACCGTGATCCTGTCTGGCTTGCACGAACGTCT
GCCGGCGCTTGCACGCTATTGCCGCGCGATGGAGGCCGCGATGTCGGCCCGCGTGCAGACCAACATCTACATGACCCCTC
CGGGCAATCAGGGATTCAACCCCCATTACGACGGCCACGATGTGCTGGTGCTGCAAGTCGCCGGCACGAAGGAATGGCGC
ATCTACGGCACGCCCGTGGAACTGCCCCTGGCCGATCAGGCGTTTGAACGGGGCATGGACGTGGGCGAAGAGGCGCAGCG
GTTTGTGCTGGAGCCCGGTGATGCCGTCTACATCCCGCGCGGCATGGCGCACGACGCTGTCGCCACAGATGAAACCTCGC
TGCACATCACGACCGGTCTGATGTTCCGCACCTGGGCCGATGCGCTGGCCGAGGCCGTGATCGCCAAGGCCCACCGCGAG
CCCAGCCTTCGCCGCGCCCTGCCGCCTGGGTTTGCCAATAACGGCGTGGATCTGGACGATTACAAAGACACATTCGCAGA
GTTGATCGAACTGGTCGGCGATGCCCATGTGGGCAAGCTGCTGTCCGGCTTTCGCGAGGAGTTCCTGACTGCCCGCGTGC
CCCGTGTGGAGGGACAGATGGCGCAACTGGCCAAGCTGGACGGGTTGACGATGGACAGCCGCATGGGCGCGCATCCCCAC
ATCGTTTTTGGCATCCACGATGTCCCGAATGAGGATCAGGTCTGTCTGGTCGCCCAGGGCGCAGAGATCATCCTGCCCGC
CCACGCCCGCGATGCGATGGAGTTCTGCATCACGACGGCCGACTTCCGCCTTGGCGATATGGAGGGCGATTTGGATGACG
CCGGAAAGATGGTGCTGGCCAAACGGTTTGTGCGCGAAGGGCTGATGCGGGTGCTCTAG

Upstream 100 bases:

>100_bases
CCAGTCAACGGAGGTAATCCCTTACCTTGATGGGCGATTGATCACCGGGGCTGGTCATGGTCAGAGTATCGCAACACAAC
ATGCAGCATAAGAGCGCCAG

Downstream 100 bases:

>100_bases
CGCTCAAGTAGCGAAGCGGTAGCGCAGTAGATCATCGCGCTCAAGTAGCGAAGCGATAGCGCGCAGCAGGTCATCGCGCT
CAAGTAGCGACGCGGTAGCG

Product: cupin 4

Products: NA

Alternate protein names: Cupin Superfamily Protein; Transcription Factor Jumonji JmjC Domain-Containing Protein; Cupin Region; Cupin Family Protein; LOW QUALITY PROTEIN Cupin 4 Family Protein; Clavaminate Synthase-Like Superfamily Protein

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MTNTFSFDWAIAPETPDTFFAEYFEKKPMLIKRGQPGYFSDLLSYGEIDRVVSTMGLHVPEINVTRADGNITPADFAYET
GQIDPVRVNQLHADGATVILSGLHERLPALARYCRAMEAAMSARVQTNIYMTPPGNQGFNPHYDGHDVLVLQVAGTKEWR
IYGTPVELPLADQAFERGMDVGEEAQRFVLEPGDAVYIPRGMAHDAVATDETSLHITTGLMFRTWADALAEAVIAKAHRE
PSLRRALPPGFANNGVDLDDYKDTFAELIELVGDAHVGKLLSGFREEFLTARVPRVEGQMAQLAKLDGLTMDSRMGAHPH
IVFGIHDVPNEDQVCLVAQGAEIILPAHARDAMEFCITTADFRLGDMEGDLDDAGKMVLAKRFVREGLMRVL

Sequences:

>Translated_392_residues
MTNTFSFDWAIAPETPDTFFAEYFEKKPMLIKRGQPGYFSDLLSYGEIDRVVSTMGLHVPEINVTRADGNITPADFAYET
GQIDPVRVNQLHADGATVILSGLHERLPALARYCRAMEAAMSARVQTNIYMTPPGNQGFNPHYDGHDVLVLQVAGTKEWR
IYGTPVELPLADQAFERGMDVGEEAQRFVLEPGDAVYIPRGMAHDAVATDETSLHITTGLMFRTWADALAEAVIAKAHRE
PSLRRALPPGFANNGVDLDDYKDTFAELIELVGDAHVGKLLSGFREEFLTARVPRVEGQMAQLAKLDGLTMDSRMGAHPH
IVFGIHDVPNEDQVCLVAQGAEIILPAHARDAMEFCITTADFRLGDMEGDLDDAGKMVLAKRFVREGLMRVL
>Mature_391_residues
TNTFSFDWAIAPETPDTFFAEYFEKKPMLIKRGQPGYFSDLLSYGEIDRVVSTMGLHVPEINVTRADGNITPADFAYETG
QIDPVRVNQLHADGATVILSGLHERLPALARYCRAMEAAMSARVQTNIYMTPPGNQGFNPHYDGHDVLVLQVAGTKEWRI
YGTPVELPLADQAFERGMDVGEEAQRFVLEPGDAVYIPRGMAHDAVATDETSLHITTGLMFRTWADALAEAVIAKAHREP
SLRRALPPGFANNGVDLDDYKDTFAELIELVGDAHVGKLLSGFREEFLTARVPRVEGQMAQLAKLDGLTMDSRMGAHPHI
VFGIHDVPNEDQVCLVAQGAEIILPAHARDAMEFCITTADFRLGDMEGDLDDAGKMVLAKRFVREGLMRVL

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI106879206, Length=274, Percent_Identity=31.7518248175182, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI110227621, Length=356, Percent_Identity=28.0898876404494, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI110227619, Length=356, Percent_Identity=28.0898876404494, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI23346418, Length=359, Percent_Identity=28.6908077994429, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71991759, Length=320, Percent_Identity=28.75, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI18858091, Length=283, Percent_Identity=27.9151943462898, Blast_Score=109, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43274; Mature: 43143

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNTFSFDWAIAPETPDTFFAEYFEKKPMLIKRGQPGYFSDLLSYGEIDRVVSTMGLHVP
CCCCEEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
EINVTRADGNITPADFAYETGQIDPVRVNQLHADGATVILSGLHERLPALARYCRAMEAA
CEEEEECCCCCCCHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
MSARVQTNIYMTPPGNQGFNPHYDGHDVLVLQVAGTKEWRIYGTPVELPLADQAFERGMD
HHHHEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHCCCC
VGEEAQRFVLEPGDAVYIPRGMAHDAVATDETSLHITTGLMFRTWADALAEAVIAKAHRE
CCCHHHHHEECCCCEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCC
PSLRRALPPGFANNGVDLDDYKDTFAELIELVGDAHVGKLLSGFREEFLTARVPRVEGQM
CHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHH
AQLAKLDGLTMDSRMGAHPHIVFGIHDVPNEDQVCLVAQGAEIILPAHARDAMEFCITTA
HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCEEEEECCHHHHHHHHHHHC
DFRLGDMEGDLDDAGKMVLAKRFVREGLMRVL
CCEECCCCCCHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
TNTFSFDWAIAPETPDTFFAEYFEKKPMLIKRGQPGYFSDLLSYGEIDRVVSTMGLHVP
CCCEEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
EINVTRADGNITPADFAYETGQIDPVRVNQLHADGATVILSGLHERLPALARYCRAMEAA
CEEEEECCCCCCCHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
MSARVQTNIYMTPPGNQGFNPHYDGHDVLVLQVAGTKEWRIYGTPVELPLADQAFERGMD
HHHHEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHCCCC
VGEEAQRFVLEPGDAVYIPRGMAHDAVATDETSLHITTGLMFRTWADALAEAVIAKAHRE
CCCHHHHHEECCCCEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCC
PSLRRALPPGFANNGVDLDDYKDTFAELIELVGDAHVGKLLSGFREEFLTARVPRVEGQM
CHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHH
AQLAKLDGLTMDSRMGAHPHIVFGIHDVPNEDQVCLVAQGAEIILPAHARDAMEFCITTA
HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCEEEEECCHHHHHHHHHHHC
DFRLGDMEGDLDDAGKMVLAKRFVREGLMRVL
CCEECCCCCCHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA