| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89052864
Identifier: 89052864
GI number: 89052864
Start: 376200
End: 377846
Strand: Direct
Name: 89052864
Synonym: Jann_0373
Alternate gene names: NA
Gene position: 376200-377846 (Clockwise)
Preceding gene: 89052863
Following gene: 89052868
Centisome position: 8.71
GC content: 46.08
Gene sequence:
>1647_bases TTGGCAAAAACGAGGAGTTATTCTCTTTACCTAGTAAAATCTGATGTGGAAGATTTTGAGGATATTTTTAGTGAAAATGC TAGAGATAAAATTAAAGCTGGTGACGCTTCCTTAAGTGAATCTAGTGAGCTTGGTGACCAAGCAGTAGTTTACATTTTCC CCGGTCCACCGAAGCCTCCATCATGGCTGTCTGAAGTCACAACAGTGTTCCAAGGCATTCCGGCACTTACAAACAGGTCT TCTTGTGCTGTAGTCGTCTTCAAGTATGCCAGTCGTATTTTTGTGACGGCATTTGCGCACGGTTGGCAATATTTGGACGA CTCAAAAATTGAGTCAGACTTTGGTCTAATGGTAGCCATAAATTCTCTTGACGACGCCAAGGTCAAACGCATTGACAGCA GTCATTTAGGTGAAGCGATGAAGGGGGTATCGCAGTCTGCGTTCCAACGGGATTTGCAGGCTTTCGGCGTAGATGAAGCA CTGGACTTGGTCCGTCGTATCTCTGGTCGAGTCGAGGATGATGATTTCGCAAGCAGCATCTCTGGCGCTACTGGGCTCAA GATTACGCGTGAAATGAACCTTTTCGATCTTCCACAAATTGCTGAGGAAGCACTCTCGCGTTCAAAGTCTAAGGATTACC GGAATACTGGCTTCTACATCATCGATAAGGTCCGCCCTATACTCGATAGAGTTGTTCTCGCGACGTTGGACCAAAAGGCG GTAGATGTCATCAAGACTGGTGATGACAACTTTGAACTTTCAATGCCTGGTTGGTCGGACGATGACGTTGTGTACTACGG TCTCTATGGCCCACGTTTAAGGGGGCGTTTTCCTGATTTGCTGATGTCCAATTATCGGGCTGCGCTGGGCTCAACTGAAC TTGCAAAACTGGACGTAAACAAAATTCAGAAGCATGGAGTTTTGGCGGAATTTAACAATGATGGCGGTGCAAAGAAAAGA TGGAGTCTCAAGAAAGCGTTGGTCGGTTCTATCGTAGATAGCGGTGGGCTCTATGCCATAAGCGAAGGCGAGTGGTACCG CTTAGATGAACAATTTAAGGCGGACGTTGATGCAGGATTTGCAACACTCAAAGAAGGTTGGTCAAATCCTCCTGAAGTTA TCAAAAAAATGGTATCTGATGATGGAAAGAAAACAGGATTTGAGAGCGAGTTTTCCTACAATGAGAGATGCGCCAATAAG TATGGCCAAGTCTTACTTGATCAAAGGATACTCACAGTACCAGCGATCCCATATGGCAAGTTTGAAGCCGCTGACCTCCT TGATATTGAAGGTAAACGCCTCATTCACGTGAAAAAAAGCTCTCGGCAGTCCAGTGTTTTAAGTCACTTCTTTAAGCAGG GTAGTAACTCGGCTCGAATATTGAAAACAATACCAGAGGCTCGCGAAGCGTTGGTCTCTAAAGTAAGGGATCTGACAGAT GACGTGACAGCCGACTCGTTGCAGACGGCCATGGGGGAAGCTATGTCTGGGTGGAAGATAGAATTCCATATTGTCGATGC TCCCCGCAAAGACGGTACATTTATGATCCCATTCTTTAGTCGGATCACGCTCCGCGATGAAAGCCGCACTTTGAAGGGAA TGACTTATGGCGTATCTTTGCGTTTCATACCCATGCCCTCGACATAA
Upstream 100 bases:
>100_bases GTGTCACAGGGGTACAAGTGAAGAAACATCAGTGCTTTCGTTGACGTGAGCTCTATGCCTTGTAAGAATATACTTAGGTT TTTCATAAGGTGTATCGGCA
Downstream 100 bases:
>100_bases CCTTTCAGACGTGAGGTCAAGACCGTTCCACTATCACTGGATGTCTCGCCCAACACCAACCCTCAAACCCCAGTAACCCT CCGCAAATTCACCCGCTCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 548; Mature: 547
Protein sequence:
>548_residues MAKTRSYSLYLVKSDVEDFEDIFSENARDKIKAGDASLSESSELGDQAVVYIFPGPPKPPSWLSEVTTVFQGIPALTNRS SCAVVVFKYASRIFVTAFAHGWQYLDDSKIESDFGLMVAINSLDDAKVKRIDSSHLGEAMKGVSQSAFQRDLQAFGVDEA LDLVRRISGRVEDDDFASSISGATGLKITREMNLFDLPQIAEEALSRSKSKDYRNTGFYIIDKVRPILDRVVLATLDQKA VDVIKTGDDNFELSMPGWSDDDVVYYGLYGPRLRGRFPDLLMSNYRAALGSTELAKLDVNKIQKHGVLAEFNNDGGAKKR WSLKKALVGSIVDSGGLYAISEGEWYRLDEQFKADVDAGFATLKEGWSNPPEVIKKMVSDDGKKTGFESEFSYNERCANK YGQVLLDQRILTVPAIPYGKFEAADLLDIEGKRLIHVKKSSRQSSVLSHFFKQGSNSARILKTIPEAREALVSKVRDLTD DVTADSLQTAMGEAMSGWKIEFHIVDAPRKDGTFMIPFFSRITLRDESRTLKGMTYGVSLRFIPMPST
Sequences:
>Translated_548_residues MAKTRSYSLYLVKSDVEDFEDIFSENARDKIKAGDASLSESSELGDQAVVYIFPGPPKPPSWLSEVTTVFQGIPALTNRS SCAVVVFKYASRIFVTAFAHGWQYLDDSKIESDFGLMVAINSLDDAKVKRIDSSHLGEAMKGVSQSAFQRDLQAFGVDEA LDLVRRISGRVEDDDFASSISGATGLKITREMNLFDLPQIAEEALSRSKSKDYRNTGFYIIDKVRPILDRVVLATLDQKA VDVIKTGDDNFELSMPGWSDDDVVYYGLYGPRLRGRFPDLLMSNYRAALGSTELAKLDVNKIQKHGVLAEFNNDGGAKKR WSLKKALVGSIVDSGGLYAISEGEWYRLDEQFKADVDAGFATLKEGWSNPPEVIKKMVSDDGKKTGFESEFSYNERCANK YGQVLLDQRILTVPAIPYGKFEAADLLDIEGKRLIHVKKSSRQSSVLSHFFKQGSNSARILKTIPEAREALVSKVRDLTD DVTADSLQTAMGEAMSGWKIEFHIVDAPRKDGTFMIPFFSRITLRDESRTLKGMTYGVSLRFIPMPST >Mature_547_residues AKTRSYSLYLVKSDVEDFEDIFSENARDKIKAGDASLSESSELGDQAVVYIFPGPPKPPSWLSEVTTVFQGIPALTNRSS CAVVVFKYASRIFVTAFAHGWQYLDDSKIESDFGLMVAINSLDDAKVKRIDSSHLGEAMKGVSQSAFQRDLQAFGVDEAL DLVRRISGRVEDDDFASSISGATGLKITREMNLFDLPQIAEEALSRSKSKDYRNTGFYIIDKVRPILDRVVLATLDQKAV DVIKTGDDNFELSMPGWSDDDVVYYGLYGPRLRGRFPDLLMSNYRAALGSTELAKLDVNKIQKHGVLAEFNNDGGAKKRW SLKKALVGSIVDSGGLYAISEGEWYRLDEQFKADVDAGFATLKEGWSNPPEVIKKMVSDDGKKTGFESEFSYNERCANKY GQVLLDQRILTVPAIPYGKFEAADLLDIEGKRLIHVKKSSRQSSVLSHFFKQGSNSARILKTIPEAREALVSKVRDLTDD VTADSLQTAMGEAMSGWKIEFHIVDAPRKDGTFMIPFFSRITLRDESRTLKGMTYGVSLRFIPMPST
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60962; Mature: 60830
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKTRSYSLYLVKSDVEDFEDIFSENARDKIKAGDASLSESSELGDQAVVYIFPGPPKPP CCCCCCEEEEEEECCHHHHHHHHCCCCHHHHCCCCCCCCCHHCCCCCEEEEEECCCCCCH SWLSEVTTVFQGIPALTNRSSCAVVVFKYASRIFVTAFAHGWQYLDDSKIESDFGLMVAI HHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCEEEEE NSLDDAKVKRIDSSHLGEAMKGVSQSAFQRDLQAFGVDEALDLVRRISGRVEDDDFASSI CCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHC SGATGLKITREMNLFDLPQIAEEALSRSKSKDYRNTGFYIIDKVRPILDRVVLATLDQKA CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHCHHH VDVIKTGDDNFELSMPGWSDDDVVYYGLYGPRLRGRFPDLLMSNYRAALGSTELAKLDVN HHHEECCCCCEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH KIQKHGVLAEFNNDGGAKKRWSLKKALVGSIVDSGGLYAISEGEWYRLDEQFKADVDAGF HHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEECCHHHHHHHHHHH ATLKEGWSNPPEVIKKMVSDDGKKTGFESEFSYNERCANKYGQVLLDQRILTVPAIPYGK HHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCC FEAADLLDIEGKRLIHVKKSSRQSSVLSHFFKQGSNSARILKTIPEAREALVSKVRDLTD CCCCCEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH DVTADSLQTAMGEAMSGWKIEFHIVDAPRKDGTFMIPFFSRITLRDESRTLKGMTYGVSL HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCEEEECCCCCCCCEEEEEEEE RFIPMPST EEEECCCC >Mature Secondary Structure AKTRSYSLYLVKSDVEDFEDIFSENARDKIKAGDASLSESSELGDQAVVYIFPGPPKPP CCCCCEEEEEEECCHHHHHHHHCCCCHHHHCCCCCCCCCHHCCCCCEEEEEECCCCCCH SWLSEVTTVFQGIPALTNRSSCAVVVFKYASRIFVTAFAHGWQYLDDSKIESDFGLMVAI HHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCEEEEE NSLDDAKVKRIDSSHLGEAMKGVSQSAFQRDLQAFGVDEALDLVRRISGRVEDDDFASSI CCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHC SGATGLKITREMNLFDLPQIAEEALSRSKSKDYRNTGFYIIDKVRPILDRVVLATLDQKA CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHCHHH VDVIKTGDDNFELSMPGWSDDDVVYYGLYGPRLRGRFPDLLMSNYRAALGSTELAKLDVN HHHEECCCCCEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH KIQKHGVLAEFNNDGGAKKRWSLKKALVGSIVDSGGLYAISEGEWYRLDEQFKADVDAGF HHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEECCHHHHHHHHHHH ATLKEGWSNPPEVIKKMVSDDGKKTGFESEFSYNERCANKYGQVLLDQRILTVPAIPYGK HHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCC FEAADLLDIEGKRLIHVKKSSRQSSVLSHFFKQGSNSARILKTIPEAREALVSKVRDLTD CCCCCEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH DVTADSLQTAMGEAMSGWKIEFHIVDAPRKDGTFMIPFFSRITLRDESRTLKGMTYGVSL HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCEEEECCCCCCCCEEEEEEEE RFIPMPST EEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA