| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89052832
Identifier: 89052832
GI number: 89052832
Start: 346562
End: 346936
Strand: Reverse
Name: 89052832
Synonym: Jann_0341
Alternate gene names: NA
Gene position: 346936-346562 (Counterclockwise)
Preceding gene: 89052838
Following gene: 89052830
Centisome position: 8.03
GC content: 54.67
Gene sequence:
>375_bases ATGGCACCGGATGCGCGGTCTGAGGTTGCAGGCGCGACATCGCGGCCCTATTTGGCTTGGGACACTCAAGACGATGGAAC CACGCCCATGACCTCTTTGTTTCAGATTCTGCTGCTTTTGCTCAGCGTCGTGAAATTCATCGTGATCGCCCATATCATCA TGTCATGGCTGATTAATTTCGGCGTTCTGAACATGCGTCAGCCCATCGTGGCGCAGATCTGGGATGGCCTGAACCGTCTT TTGGAGCCGATATACGGACCCATCCGACGCTTTTTGCCGAATATGGGCGGGCTGGATCTGGCCCCTCTGGTCGTCATCCT TGGCGTCTATGCGATCGAGATCATCTTGCGCAACAATGTGGCGCTCTTCCTGTAA
Upstream 100 bases:
>100_bases GCGACGTTCGCGCAGCACAAGCGCGCCAAATCTGAGGTAGGGATACATGCCCCCTGCATCGCGCTTGTGAACGTCGGGTG CAAGTGCACCGTGACGTCAC
Downstream 100 bases:
>100_bases GCGCCAGATCGTCCGCCCCGCAGGTATATCAATGGTAGATCAATTCAGGTGATCGGCGACGAACGGCGCTTCTGATCCCC AGACCTCCAGCACGCGCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: YGGT Family; YGGT Family Protein
Number of amino acids: Translated: 124; Mature: 123
Protein sequence:
>124_residues MAPDARSEVAGATSRPYLAWDTQDDGTTPMTSLFQILLLLLSVVKFIVIAHIIMSWLINFGVLNMRQPIVAQIWDGLNRL LEPIYGPIRRFLPNMGGLDLAPLVVILGVYAIEIILRNNVALFL
Sequences:
>Translated_124_residues MAPDARSEVAGATSRPYLAWDTQDDGTTPMTSLFQILLLLLSVVKFIVIAHIIMSWLINFGVLNMRQPIVAQIWDGLNRL LEPIYGPIRRFLPNMGGLDLAPLVVILGVYAIEIILRNNVALFL >Mature_123_residues APDARSEVAGATSRPYLAWDTQDDGTTPMTSLFQILLLLLSVVKFIVIAHIIMSWLINFGVLNMRQPIVAQIWDGLNRLL EPIYGPIRRFLPNMGGLDLAPLVVILGVYAIEIILRNNVALFL
Specific function: Unknown
COG id: COG0762
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13816; Mature: 13685
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPDARSEVAGATSRPYLAWDTQDDGTTPMTSLFQILLLLLSVVKFIVIAHIIMSWLINF CCCCCHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVLNMRQPIVAQIWDGLNRLLEPIYGPIRRFLPNMGGLDLAPLVVILGVYAIEIILRNNV HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC ALFL CCCC >Mature Secondary Structure APDARSEVAGATSRPYLAWDTQDDGTTPMTSLFQILLLLLSVVKFIVIAHIIMSWLINF CCCCHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVLNMRQPIVAQIWDGLNRLLEPIYGPIRRFLPNMGGLDLAPLVVILGVYAIEIILRNNV HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC ALFL CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA