Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89052832

Identifier: 89052832

GI number: 89052832

Start: 346562

End: 346936

Strand: Reverse

Name: 89052832

Synonym: Jann_0341

Alternate gene names: NA

Gene position: 346936-346562 (Counterclockwise)

Preceding gene: 89052838

Following gene: 89052830

Centisome position: 8.03

GC content: 54.67

Gene sequence:

>375_bases
ATGGCACCGGATGCGCGGTCTGAGGTTGCAGGCGCGACATCGCGGCCCTATTTGGCTTGGGACACTCAAGACGATGGAAC
CACGCCCATGACCTCTTTGTTTCAGATTCTGCTGCTTTTGCTCAGCGTCGTGAAATTCATCGTGATCGCCCATATCATCA
TGTCATGGCTGATTAATTTCGGCGTTCTGAACATGCGTCAGCCCATCGTGGCGCAGATCTGGGATGGCCTGAACCGTCTT
TTGGAGCCGATATACGGACCCATCCGACGCTTTTTGCCGAATATGGGCGGGCTGGATCTGGCCCCTCTGGTCGTCATCCT
TGGCGTCTATGCGATCGAGATCATCTTGCGCAACAATGTGGCGCTCTTCCTGTAA

Upstream 100 bases:

>100_bases
GCGACGTTCGCGCAGCACAAGCGCGCCAAATCTGAGGTAGGGATACATGCCCCCTGCATCGCGCTTGTGAACGTCGGGTG
CAAGTGCACCGTGACGTCAC

Downstream 100 bases:

>100_bases
GCGCCAGATCGTCCGCCCCGCAGGTATATCAATGGTAGATCAATTCAGGTGATCGGCGACGAACGGCGCTTCTGATCCCC
AGACCTCCAGCACGCGCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: YGGT Family; YGGT Family Protein

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MAPDARSEVAGATSRPYLAWDTQDDGTTPMTSLFQILLLLLSVVKFIVIAHIIMSWLINFGVLNMRQPIVAQIWDGLNRL
LEPIYGPIRRFLPNMGGLDLAPLVVILGVYAIEIILRNNVALFL

Sequences:

>Translated_124_residues
MAPDARSEVAGATSRPYLAWDTQDDGTTPMTSLFQILLLLLSVVKFIVIAHIIMSWLINFGVLNMRQPIVAQIWDGLNRL
LEPIYGPIRRFLPNMGGLDLAPLVVILGVYAIEIILRNNVALFL
>Mature_123_residues
APDARSEVAGATSRPYLAWDTQDDGTTPMTSLFQILLLLLSVVKFIVIAHIIMSWLINFGVLNMRQPIVAQIWDGLNRLL
EPIYGPIRRFLPNMGGLDLAPLVVILGVYAIEIILRNNVALFL

Specific function: Unknown

COG id: COG0762

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13816; Mature: 13685

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPDARSEVAGATSRPYLAWDTQDDGTTPMTSLFQILLLLLSVVKFIVIAHIIMSWLINF
CCCCCHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVLNMRQPIVAQIWDGLNRLLEPIYGPIRRFLPNMGGLDLAPLVVILGVYAIEIILRNNV
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
ALFL
CCCC
>Mature Secondary Structure 
APDARSEVAGATSRPYLAWDTQDDGTTPMTSLFQILLLLLSVVKFIVIAHIIMSWLINF
CCCCHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVLNMRQPIVAQIWDGLNRLLEPIYGPIRRFLPNMGGLDLAPLVVILGVYAIEIILRNNV
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
ALFL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA