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The map label for this gene is intZ [H]

Identifier: 89052720

GI number: 89052720

Start: 223268

End: 224473

Strand: Direct

Name: intZ [H]

Synonym: Jann_0229

Alternate gene names: 89052720

Gene position: 223268-224473 (Clockwise)

Preceding gene: 89052713

Following gene: 89052721

Centisome position: 5.17

GC content: 56.88

Gene sequence:

>1206_bases
ATGGCCCACGTTCTAAATCGACTAAAAGCGACTCAGATCAGTGCCCTGCCAAAAGGCAAGTATGCCGATGGCGCTGGACT
GTGGCTCTATAAGTCAACCGATGAAAGTGGGCAGTGGGTTTTCCGCTATACGCTCTACACCAGACGTCACGAAATGGGTT
TGGGATCTGCTAGCACTGTAGCACTTAAGGCTGCCCGCGCCCGCGCTGCTGGGCTGCGCGAACAAGTCCAACAAGGTGTT
GATCCGATCAAGGCGCGACGCGACGCTGAGCAAGCTGCGCTGCGCAACATGAACACCCTTCATGACGTCACTCTAGACGC
GTTCGAAAGCCGCAAGGCTGATCTTCGTGATGATGGAAAGGCAGGCCGATGGCTCAGCCCGCTTGAATTGCATGTTCTGC
CTAAGCTGGGCCGAATGCCTATTTCTGAGATAGACCAGCGCGATATCCGCGACACACTCGCACCTATTTGGCACGCCAAG
GCCGACACCGCCCGAAAGGCCATGGGGCGTCTCGGTATTGTGTTTAAGCACGCGGCGGCGCTGGGCTTGGACGTGGATCT
ACAAGCAACCGAAAAGGCTAAGGCACTGTTGGGTAGGTCAAGACATGTCTCGGAACATATACCGTCAATGGATTGGCGGG
AGGTGCCCGCGTTTTTCGCCAAGTTGTCCGATGGCTCGACCACGCACCTCGCCCTGCGCTTACTGATTCTCACGGGCCTA
CGCAGCAAGCCCATTCGCTTCGCTCATGTCGATGAAATCGACGGGAACGTATGGACGGTTCCGGGTGAGAAGATGAAGGC
CCGAAAGCATCAGTCAGAAGACTTTCGGGTTCCACTATCCTCTCTCGCCCTTGAAGTGATCGAGGCAGCGAAGCCAATGG
CCCGGGATGGATACCTATTCCCCGGCGTCCGTAAGGGGGTCATTTCAGACGCAACCATGTCCAGTCTAATGACGCGCATG
GAGTTGACGGCACGGCCCCATGGGTTCCGGTCCAGTTTCAGGGAGTGGGCTGCAAAGGCCGGGGGCGTTGAGTTCGATAC
AGCCGAAATGTCGATATCCCACAAGGTCCGAAACAGTACCCAAAAGGCTTACCTTCGCGATGATCAGTTGGAGCAACGGT
CAGTCCTGATGGAGCGTTGGGCCGATCACGTAAGTGGCGGCACGGGGCAGGTTGTTAGCCTAGCTATTGAGGGGCGGCGG
TCATGA

Upstream 100 bases:

>100_bases
GAAGTGTTTCGCCTTAGTAATATTGTTCTTTCTTGTCTTTCAACGTCTTTTGATGTCCGTCCGCAACCCCTATCTTAGAG
GTGGATAGTCAGGGGGATAA

Downstream 100 bases:

>100_bases
ACGTTTTCGGCGACCCATTCTTTAGAGATGAGTTTCGCCTTGAGGGGGAGGTTGGGTATTCGACTATCTTCGGGGCTATC
AAAGTCACAAGCCGGACGCA

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MAHVLNRLKATQISALPKGKYADGAGLWLYKSTDESGQWVFRYTLYTRRHEMGLGSASTVALKAARARAAGLREQVQQGV
DPIKARRDAEQAALRNMNTLHDVTLDAFESRKADLRDDGKAGRWLSPLELHVLPKLGRMPISEIDQRDIRDTLAPIWHAK
ADTARKAMGRLGIVFKHAAALGLDVDLQATEKAKALLGRSRHVSEHIPSMDWREVPAFFAKLSDGSTTHLALRLLILTGL
RSKPIRFAHVDEIDGNVWTVPGEKMKARKHQSEDFRVPLSSLALEVIEAAKPMARDGYLFPGVRKGVISDATMSSLMTRM
ELTARPHGFRSSFREWAAKAGGVEFDTAEMSISHKVRNSTQKAYLRDDQLEQRSVLMERWADHVSGGTGQVVSLAIEGRR
S

Sequences:

>Translated_401_residues
MAHVLNRLKATQISALPKGKYADGAGLWLYKSTDESGQWVFRYTLYTRRHEMGLGSASTVALKAARARAAGLREQVQQGV
DPIKARRDAEQAALRNMNTLHDVTLDAFESRKADLRDDGKAGRWLSPLELHVLPKLGRMPISEIDQRDIRDTLAPIWHAK
ADTARKAMGRLGIVFKHAAALGLDVDLQATEKAKALLGRSRHVSEHIPSMDWREVPAFFAKLSDGSTTHLALRLLILTGL
RSKPIRFAHVDEIDGNVWTVPGEKMKARKHQSEDFRVPLSSLALEVIEAAKPMARDGYLFPGVRKGVISDATMSSLMTRM
ELTARPHGFRSSFREWAAKAGGVEFDTAEMSISHKVRNSTQKAYLRDDQLEQRSVLMERWADHVSGGTGQVVSLAIEGRR
S
>Mature_400_residues
AHVLNRLKATQISALPKGKYADGAGLWLYKSTDESGQWVFRYTLYTRRHEMGLGSASTVALKAARARAAGLREQVQQGVD
PIKARRDAEQAALRNMNTLHDVTLDAFESRKADLRDDGKAGRWLSPLELHVLPKLGRMPISEIDQRDIRDTLAPIWHAKA
DTARKAMGRLGIVFKHAAALGLDVDLQATEKAKALLGRSRHVSEHIPSMDWREVPAFFAKLSDGSTTHLALRLLILTGLR
SKPIRFAHVDEIDGNVWTVPGEKMKARKHQSEDFRVPLSSLALEVIEAAKPMARDGYLFPGVRKGVISDATMSSLMTRME
LTARPHGFRSSFREWAAKAGGVEFDTAEMSISHKVRNSTQKAYLRDDQLEQRSVLMERWADHVSGGTGQVVSLAIEGRRS

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=371, Percent_Identity=29.9191374663073, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788974, Length=417, Percent_Identity=27.8177458033573, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1788690, Length=400, Percent_Identity=25.75, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44615; Mature: 44483

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHVLNRLKATQISALPKGKYADGAGLWLYKSTDESGQWVFRYTLYTRRHEMGLGSASTV
CHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEHHHHHHCCCCCHHHH
ALKAARARAAGLREQVQQGVDPIKARRDAEQAALRNMNTLHDVTLDAFESRKADLRDDGK
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC
AGRWLSPLELHVLPKLGRMPISEIDQRDIRDTLAPIWHAKADTARKAMGRLGIVFKHAAA
CCCCCCCHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LGLDVDLQATEKAKALLGRSRHVSEHIPSMDWREVPAFFAKLSDGSTTHLALRLLILTGL
HCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
RSKPIRFAHVDEIDGNVWTVPGEKMKARKHQSEDFRVPLSSLALEVIEAAKPMARDGYLF
CCCCEEEEEEECCCCCEEECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
PGVRKGVISDATMSSLMTRMELTARPHGFRSSFREWAAKAGGVEFDTAEMSISHKVRNST
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHH
QKAYLRDDQLEQRSVLMERWADHVSGGTGQVVSLAIEGRRS
HHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
>Mature Secondary Structure 
AHVLNRLKATQISALPKGKYADGAGLWLYKSTDESGQWVFRYTLYTRRHEMGLGSASTV
HHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEHHHHHHCCCCCHHHH
ALKAARARAAGLREQVQQGVDPIKARRDAEQAALRNMNTLHDVTLDAFESRKADLRDDGK
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC
AGRWLSPLELHVLPKLGRMPISEIDQRDIRDTLAPIWHAKADTARKAMGRLGIVFKHAAA
CCCCCCCHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LGLDVDLQATEKAKALLGRSRHVSEHIPSMDWREVPAFFAKLSDGSTTHLALRLLILTGL
HCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
RSKPIRFAHVDEIDGNVWTVPGEKMKARKHQSEDFRVPLSSLALEVIEAAKPMARDGYLF
CCCCEEEEEEECCCCCEEECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
PGVRKGVISDATMSSLMTRMELTARPHGFRSSFREWAAKAGGVEFDTAEMSISHKVRNST
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHH
QKAYLRDDQLEQRSVLMERWADHVSGGTGQVVSLAIEGRRS
HHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]