Click here to switch to the map view.

The map label for this gene is crtD [H]

Identifier: 89052674

GI number: 89052674

Start: 175691

End: 177262

Strand: Direct

Name: crtD [H]

Synonym: Jann_0183

Alternate gene names: 89052674

Gene position: 175691-177262 (Clockwise)

Preceding gene: 89052660

Following gene: 89052675

Centisome position: 4.07

GC content: 61.51

Gene sequence:

>1572_bases
TTGGAGGGTTATCTACTGGGAGATTCTGCGCATAACGCTGTGGTCATTGGTGCCGGGATCGGCGGCCTTTCGGCTGCGTT
GCGCCTTGCGGCCCGTGGTGTACGTGTGACCGTAGTGGAGATGGCGGATGCGCCGGGTGGTAAAATACGAACCGCCCCGT
CCGCCGCTGGACCAGTGGATATCGGACCCACGGTTCTGACCATGCGGCCGGTGTTCGAGGCCTTATTCGCCGATGTCGGC
GAGCGGTTGGCAGATCATGTGACCCTCCACAAAGATCCGCTGTTGGCTCGGCATTTTTGGCGCGATGGATCGACGCTTGA
TCTATACGACGATCCTGACGCAAGCATCGCCGCTGTTCATGCCTTCGCCGGATCCAAGGCGGCGCGGCAGTTCCAGCGTT
TCGCGTCTTCGGCCAAACAATTGTATGAGGCCTTCGACGGACCCATCATGCAATCCGCTGCCCCGGCCCTTCTGCCTCTG
ACCGCCCATGTCCTGAAAAACCCAAAGCTCATTCCCGCGATGATGCCAGGCCTGAGCCTTGCGCGGCGGTTGCGACTGTC
CTTCGACGACCCACGCTTGCGGCAATTGTTCGGGCGATATGCGACCTATGTGGGTGGTTCGCCATATCAAAGCCCTGCTG
TCCTCGGCCTGATCTGGCATTCGGAGGCGCAGGGCGTCTGGTCGGTAGAAGGTGGCATGCATGCTCTGGCACGTGCGCTC
CACGACTTGGCCGTCGCCAAAGGTGTCCAGTTTCAGTTTGGCGTCGCCGTCGATCAGATCACGCAACACGGCGGCTCTGT
TTCTGGCGTACATCTGGCGGATGGAACGCACCTTGCGGCCGGCACGGTCGTGTTTAACGGCGACCCCCGTGCACTGTCGA
AGGGTCTGCTGGAGGCAAGTGCCATCCCGCACGCGGGCACTGAGCCGCGGAGCCTGTCGGCCTTTGTCTGGGGGTTCGCG
GCGGAGCCATCAGGCGTTGAGCTTGCCCATCACAACGTGTTCTTCTGCGACGACCCTAAGTTGGAATTTGGGGACCTCGC
CAAGGATCAGATGCCGCGCGACGCCACATTGTACGTCTGCGCGCAGGATCGCGGCATCACCCAACCGAATGGACCTGAGC
GGTTCGAGATCATCATGAACGGACCCCCCGGCCATAAGACGAGTGAGGAGGCTGAAAAAACATGCCAAACACGCACGTTC
GAGACTTTGCAACAGATGGGGCTGACCTTCTCACCAAGGCCGGAGAGACACGCCCTGACGACCCCCAAAGACTTCAACCA
AGCCTTTCCCGCGTCGGACGGTTCCCTTTACGGACGGAGCCCGCATGGCATGATGGCGACCTTCCAAAGGCCGACGGCGC
GCACGACGGTGAAGGGGCTATATCTGGCAGGCGGTGGAGCACATCCGGGGGCGGGGGTGCCGATGGCCTGCCTCTCCGGC
AAGCACGCGGCCGAGGCGATCTTGACCGACCTTGCTTTGACATCAACGTCCCCGAGGACGGCTACGCCTGGTGGTACGTC
GATGGGATCAGCGACGATGGCAAACAGGCCATCTCCATCATCGGCTTCATAG

Upstream 100 bases:

>100_bases
TGGGTTGCACCTCCTCAAAGGGATTCGGTTCACGGATCTGACACCCGATATGTAAATCAGACTGGACATATACGGGATAG
GTGTCAACATTGACTGACAC

Downstream 100 bases:

>100_bases
GGTCGGTTTTCAGCCCCTGGTATCGGTGGAGCGGGCGCAAGAACCCGGCCAACAATTGCTGCCTGAACGTCGCAACCTAC
GGGCGTGGCGGACGCTGGAC

Product: amine oxidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MEGYLLGDSAHNAVVIGAGIGGLSAALRLAARGVRVTVVEMADAPGGKIRTAPSAAGPVDIGPTVLTMRPVFEALFADVG
ERLADHVTLHKDPLLARHFWRDGSTLDLYDDPDASIAAVHAFAGSKAARQFQRFASSAKQLYEAFDGPIMQSAAPALLPL
TAHVLKNPKLIPAMMPGLSLARRLRLSFDDPRLRQLFGRYATYVGGSPYQSPAVLGLIWHSEAQGVWSVEGGMHALARAL
HDLAVAKGVQFQFGVAVDQITQHGGSVSGVHLADGTHLAAGTVVFNGDPRALSKGLLEASAIPHAGTEPRSLSAFVWGFA
AEPSGVELAHHNVFFCDDPKLEFGDLAKDQMPRDATLYVCAQDRGITQPNGPERFEIIMNGPPGHKTSEEAEKTCQTRTF
ETLQQMGLTFSPRPERHALTTPKDFNQAFPASDGSLYGRSPHGMMATFQRPTARTTVKGLYLAGGGAHPGAGVPMACLSG
KHAAEAILTDLALTSTSPRTATPGGTSMGSATMANRPSPSSAS

Sequences:

>Translated_523_residues
MEGYLLGDSAHNAVVIGAGIGGLSAALRLAARGVRVTVVEMADAPGGKIRTAPSAAGPVDIGPTVLTMRPVFEALFADVG
ERLADHVTLHKDPLLARHFWRDGSTLDLYDDPDASIAAVHAFAGSKAARQFQRFASSAKQLYEAFDGPIMQSAAPALLPL
TAHVLKNPKLIPAMMPGLSLARRLRLSFDDPRLRQLFGRYATYVGGSPYQSPAVLGLIWHSEAQGVWSVEGGMHALARAL
HDLAVAKGVQFQFGVAVDQITQHGGSVSGVHLADGTHLAAGTVVFNGDPRALSKGLLEASAIPHAGTEPRSLSAFVWGFA
AEPSGVELAHHNVFFCDDPKLEFGDLAKDQMPRDATLYVCAQDRGITQPNGPERFEIIMNGPPGHKTSEEAEKTCQTRTF
ETLQQMGLTFSPRPERHALTTPKDFNQAFPASDGSLYGRSPHGMMATFQRPTARTTVKGLYLAGGGAHPGAGVPMACLSG
KHAAEAILTDLALTSTSPRTATPGGTSMGSATMANRPSPSSAS
>Mature_523_residues
MEGYLLGDSAHNAVVIGAGIGGLSAALRLAARGVRVTVVEMADAPGGKIRTAPSAAGPVDIGPTVLTMRPVFEALFADVG
ERLADHVTLHKDPLLARHFWRDGSTLDLYDDPDASIAAVHAFAGSKAARQFQRFASSAKQLYEAFDGPIMQSAAPALLPL
TAHVLKNPKLIPAMMPGLSLARRLRLSFDDPRLRQLFGRYATYVGGSPYQSPAVLGLIWHSEAQGVWSVEGGMHALARAL
HDLAVAKGVQFQFGVAVDQITQHGGSVSGVHLADGTHLAAGTVVFNGDPRALSKGLLEASAIPHAGTEPRSLSAFVWGFA
AEPSGVELAHHNVFFCDDPKLEFGDLAKDQMPRDATLYVCAQDRGITQPNGPERFEIIMNGPPGHKTSEEAEKTCQTRTF
ETLQQMGLTFSPRPERHALTTPKDFNQAFPASDGSLYGRSPHGMMATFQRPTARTTVKGLYLAGGGAHPGAGVPMACLSG
KHAAEAILTDLALTSTSPRTATPGGTSMGSATMANRPSPSSAS

Specific function: Converts hydroxyneurosporene to demethylspheroidene or methoxyneurosporene to spheroidene [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR000815
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 55132; Mature: 55132

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS00982 PHYTOENE_DH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGYLLGDSAHNAVVIGAGIGGLSAALRLAARGVRVTVVEMADAPGGKIRTAPSAAGPVD
CCCEEECCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCCCCC
IGPTVLTMRPVFEALFADVGERLADHVTLHKDPLLARHFWRDGSTLDLYDDPDASIAAVH
CCCCEEEHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHCCCCCEEEECCCCCCCEEEHH
AFAGSKAARQFQRFASSAKQLYEAFDGPIMQSAAPALLPLTAHVLKNPKLIPAMMPGLSL
HHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHCCCCCCHHHCCHHHH
ARRLRLSFDDPRLRQLFGRYATYVGGSPYQSPAVLGLIWHSEAQGVWSVEGGMHALARAL
HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEECCHHHHHHHHH
HDLAVAKGVQFQFGVAVDQITQHGGSVSGVHLADGTHLAAGTVVFNGDPRALSKGLLEAS
HHHHHHCCCCEEECHHHHHHHHCCCCCCEEEECCCCEEEEEEEEECCCHHHHHHHHHHHH
AIPHAGTEPRSLSAFVWGFAAEPSGVELAHHNVFFCDDPKLEFGDLAKDQMPRDATLYVC
CCCCCCCCCCCCEEEEEEEECCCCCCEEEECEEEEECCCCCCCCCCHHHHCCCCCEEEEE
AQDRGITQPNGPERFEIIMNGPPGHKTSEEAEKTCQTRTFETLQQMGLTFSPRPERHALT
ECCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
TPKDFNQAFPASDGSLYGRSPHGMMATFQRPTARTTVKGLYLAGGGAHPGAGVPMACLSG
CCHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCHHEEEEEEEECCCCCCCCCCCHHHHCC
KHAAEAILTDLALTSTSPRTATPGGTSMGSATMANRPSPSSAS
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEGYLLGDSAHNAVVIGAGIGGLSAALRLAARGVRVTVVEMADAPGGKIRTAPSAAGPVD
CCCEEECCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCCCCC
IGPTVLTMRPVFEALFADVGERLADHVTLHKDPLLARHFWRDGSTLDLYDDPDASIAAVH
CCCCEEEHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHCCCCCEEEECCCCCCCEEEHH
AFAGSKAARQFQRFASSAKQLYEAFDGPIMQSAAPALLPLTAHVLKNPKLIPAMMPGLSL
HHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHCCCCCCHHHCCHHHH
ARRLRLSFDDPRLRQLFGRYATYVGGSPYQSPAVLGLIWHSEAQGVWSVEGGMHALARAL
HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEECCHHHHHHHHH
HDLAVAKGVQFQFGVAVDQITQHGGSVSGVHLADGTHLAAGTVVFNGDPRALSKGLLEAS
HHHHHHCCCCEEECHHHHHHHHCCCCCCEEEECCCCEEEEEEEEECCCHHHHHHHHHHHH
AIPHAGTEPRSLSAFVWGFAAEPSGVELAHHNVFFCDDPKLEFGDLAKDQMPRDATLYVC
CCCCCCCCCCCCEEEEEEEECCCCCCEEEECEEEEECCCCCCCCCCHHHHCCCCCEEEEE
AQDRGITQPNGPERFEIIMNGPPGHKTSEEAEKTCQTRTFETLQQMGLTFSPRPERHALT
ECCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
TPKDFNQAFPASDGSLYGRSPHGMMATFQRPTARTTVKGLYLAGGGAHPGAGVPMACLSG
CCHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCHHEEEEEEEECCCCCCCCCCCHHHHCC
KHAAEAILTDLALTSTSPRTATPGGTSMGSATMANRPSPSSAS
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1612412; 7721699 [H]