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The map label for this gene is idi

Identifier: 89052659

GI number: 89052659

Start: 161332

End: 161862

Strand: Direct

Name: idi

Synonym: Jann_0168

Alternate gene names: 89052659

Gene position: 161332-161862 (Clockwise)

Preceding gene: 89052658

Following gene: 89052660

Centisome position: 3.74

GC content: 58.95

Gene sequence:

>531_bases
ATGACTATTCACATTCCCACATGGGTCAACGGCACCCTTCAACCTGTGGAAAAGCTGGAAGCGCACCTGCGCGGGCTTCG
CCACAAGGCGATTTCCGTGTTCATCCTGCGCGACGGCGATGTGCTGCTTCAGCGGCGCGCGATGGGAAAGTATCACACGC
CTGGGTTGTGGGCGAATACGTGCTGCACCCATCCCCAATGGGACGAGGCGGGCGTGGATTGTGCCATGCGCAGGCTTGAT
GAAGAGCTGGGGGTCAAAGATGTTCCCCTCAGGTATCGCGACACGGTCGAATATCGCGCCGATGTGGGCGGCGGCCTGAT
CGAGCACGAAGTTGTGGATATCTTTGTGGGTGAAATGCCGTCTGGTATGGAGCCTGTGATGAACCCCGAGGAAGTGATGG
AAGTGGAATGGACGCCGCTGGCCACCCTCGCCCAAAGGGTGGAGGCGTCGCCCGAGACCTTCACGCCCTGGCTGCACATC
TACCTGCGCAAATACGCCGACATTATTTTTGAAAGCGCGACAGACGCATAG

Upstream 100 bases:

>100_bases
ATATGAACAAGTCTCTGGTCAAGGCGCGCCCGATGGCCCATCTGAAGATCGGGATCAAGAATGTGTCCCACCTTCTGGGC
CTGGTACAACCGACACGCGT

Downstream 100 bases:

>100_bases
GGTGTTCCGAAATGGGCCATGTCTGCTAGCCTCCTGACAGTTGATATGTTCAGGAGAGTACGATGCGGGTTGTCTTCATT
TCTTTGGTTTTGTCTTTCAC

Product: isopentenyl-diphosphate delta-isomerase

Products: NA

Alternate protein names: IPP isomerase; IPP:DMAPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MTIHIPTWVNGTLQPVEKLEAHLRGLRHKAISVFILRDGDVLLQRRAMGKYHTPGLWANTCCTHPQWDEAGVDCAMRRLD
EELGVKDVPLRYRDTVEYRADVGGGLIEHEVVDIFVGEMPSGMEPVMNPEEVMEVEWTPLATLAQRVEASPETFTPWLHI
YLRKYADIIFESATDA

Sequences:

>Translated_176_residues
MTIHIPTWVNGTLQPVEKLEAHLRGLRHKAISVFILRDGDVLLQRRAMGKYHTPGLWANTCCTHPQWDEAGVDCAMRRLD
EELGVKDVPLRYRDTVEYRADVGGGLIEHEVVDIFVGEMPSGMEPVMNPEEVMEVEWTPLATLAQRVEASPETFTPWLHI
YLRKYADIIFESATDA
>Mature_175_residues
TIHIPTWVNGTLQPVEKLEAHLRGLRHKAISVFILRDGDVLLQRRAMGKYHTPGLWANTCCTHPQWDEAGVDCAMRRLDE
ELGVKDVPLRYRDTVEYRADVGGGLIEHEVVDIFVGEMPSGMEPVMNPEEVMEVEWTPLATLAQRVEASPETFTPWLHIY
LRKYADIIFESATDA

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1443

COG function: function code I; Isopentenyldiphosphate isomerase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain

Homologues:

Organism=Escherichia coli, GI1789255, Length=158, Percent_Identity=37.3417721518987, Blast_Score=94, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17554092, Length=160, Percent_Identity=32.5, Blast_Score=74, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6325140, Length=178, Percent_Identity=31.4606741573034, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI_JANSC (Q28W27)

Other databases:

- EMBL:   CP000264
- RefSeq:   YP_508110.1
- HSSP:   Q46822
- ProteinModelPortal:   Q28W27
- SMR:   Q28W27
- STRING:   Q28W27
- GeneID:   3932605
- GenomeReviews:   CP000264_GR
- KEGG:   jan:Jann_0168
- eggNOG:   COG1443
- HOGENOM:   HBG416977
- OMA:   HKAVSVF
- PhylomeDB:   Q28W27
- ProtClustDB:   CLSK933164
- BioCyc:   JSP290400:JANN_0168-MONOMER
- GO:   GO:0005737
- GO:   GO:0015979
- HAMAP:   MF_00202
- InterPro:   IPR011876
- InterPro:   IPR000086
- InterPro:   IPR015797
- Gene3D:   G3DSA:3.90.79.10
- PANTHER:   PTHR10885
- PIRSF:   PIRSF018427
- TIGRFAMs:   TIGR02150

Pfam domain/function: PF00293 NUDIX; SSF55811 NUDIX_hydrolase

EC number: =5.3.3.2

Molecular weight: Translated: 20026; Mature: 19895

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS51462 NUDIX

Important sites: ACT_SITE 62-62 ACT_SITE 110-110

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIHIPTWVNGTLQPVEKLEAHLRGLRHKAISVFILRDGDVLLQRRAMGKYHTPGLWANT
CEEECCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHCCCCCCCCCCCCC
CCTHPQWDEAGVDCAMRRLDEELGVKDVPLRYRDTVEYRADVGGGLIEHEVVDIFVGEMP
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
SGMEPVMNPEEVMEVEWTPLATLAQRVEASPETFTPWLHIYLRKYADIIFESATDA
CCCCCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TIHIPTWVNGTLQPVEKLEAHLRGLRHKAISVFILRDGDVLLQRRAMGKYHTPGLWANT
EEECCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHCCCCCCCCCCCCC
CCTHPQWDEAGVDCAMRRLDEELGVKDVPLRYRDTVEYRADVGGGLIEHEVVDIFVGEMP
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
SGMEPVMNPEEVMEVEWTPLATLAQRVEASPETFTPWLHIYLRKYADIIFESATDA
CCCCCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA