| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89052621
Identifier: 89052621
GI number: 89052621
Start: 119593
End: 119955
Strand: Direct
Name: 89052621
Synonym: Jann_0130
Alternate gene names: NA
Gene position: 119593-119955 (Clockwise)
Preceding gene: 89052620
Following gene: 89052622
Centisome position: 2.77
GC content: 55.1
Gene sequence:
>363_bases ATGCTGACCCGTTTGTCCCTTTGCTTCGCTCTGCTCACATCCACCGCCCATGCTGATGGTTTTGCTGTCGGGGATACATT CATGGATCCGATGGAAATCGCCCAAAGTGCATTTGCAGACTTCAACTATTACGGAGAAGGGCGGCCTGCCATCACGGTTG ATGCCAGTGTCGATTTCTTCAACCAGATGACCATTCTGGTCGCCGAAACTGGGTTCGCCGACGACTCGGTGGATGGCGTG CGCAACCAATACGTGTTGCAGCAAGGCGACGGGGAGGTTTGGACAATCATCTTCACACGGACAGACTACCGGTGTGGGCG CGGCGCGAATACTGTGACCTGGCAAACAAACCTGTGCCCGTAA
Upstream 100 bases:
>100_bases GCCCCGGGTGGACAAAACCCACTTCTCGGTGGCCGCTAATGCTTTGCACACCTTCGCGCGGTAGGTCATCCTGCGGGCAT TGCCCCAAAAGGAGATTGCC
Downstream 100 bases:
>100_bases CCGCCCGCATCGCCTGCGCGGGCATATGGTTTGATGGAAAGGATACCCCGTGACACCGAACATACGTGGCGCGCTTTTAG GCCTGTTGGCGTTTGGGATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 120; Mature: 120
Protein sequence:
>120_residues MLTRLSLCFALLTSTAHADGFAVGDTFMDPMEIAQSAFADFNYYGEGRPAITVDASVDFFNQMTILVAETGFADDSVDGV RNQYVLQQGDGEVWTIIFTRTDYRCGRGANTVTWQTNLCP
Sequences:
>Translated_120_residues MLTRLSLCFALLTSTAHADGFAVGDTFMDPMEIAQSAFADFNYYGEGRPAITVDASVDFFNQMTILVAETGFADDSVDGV RNQYVLQQGDGEVWTIIFTRTDYRCGRGANTVTWQTNLCP >Mature_120_residues MLTRLSLCFALLTSTAHADGFAVGDTFMDPMEIAQSAFADFNYYGEGRPAITVDASVDFFNQMTILVAETGFADDSVDGV RNQYVLQQGDGEVWTIIFTRTDYRCGRGANTVTWQTNLCP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13226; Mature: 13226
Theoretical pI: Translated: 3.93; Mature: 3.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTRLSLCFALLTSTAHADGFAVGDTFMDPMEIAQSAFADFNYYGEGRPAITVDASVDFF CCHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCEECCCCCEEEEECCCCCC NQMTILVAETGFADDSVDGVRNQYVLQQGDGEVWTIIFTRTDYRCGRGANTVTWQTNLCP CCEEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCEEEEECCCCC >Mature Secondary Structure MLTRLSLCFALLTSTAHADGFAVGDTFMDPMEIAQSAFADFNYYGEGRPAITVDASVDFF CCHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCEECCCCCEEEEECCCCCC NQMTILVAETGFADDSVDGVRNQYVLQQGDGEVWTIIFTRTDYRCGRGANTVTWQTNLCP CCEEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA