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The map label for this gene is yafC [H]

Identifier: 89052618

GI number: 89052618

Start: 117053

End: 117940

Strand: Direct

Name: yafC [H]

Synonym: Jann_0127

Alternate gene names: 89052618

Gene position: 117053-117940 (Clockwise)

Preceding gene: 89052616

Following gene: 89052619

Centisome position: 2.71

GC content: 64.19

Gene sequence:

>888_bases
ATGGATCAAGATCTCGACTGGACCCTCCTGCGTGCCGTGCTGGCGGTGGCCGATACCGGGTCCCTCTCAGGTGCGGCGGC
ACAATTGACGCGCACCCAACCGACCCTCGGACGGCAAATCAAGGCGGCTGAACAGGCCCTTGGCCAGCCACTCTTCACGC
GGCATGCGCGGGGCCTGACGCCGACACCATTCTGCGAAACGCTTCTGCCCGCCGCGCAGCAAATGAACGACGCTGCCAAG
GCTGTCTCTGTCCTCGCCGCCGGGCAATCGCCTGACACCTCCGGGCGCGTTCGGCTGACCGCGTCCGTCTTCGTGACGGC
CCATATCCTGCCCGGCATCCTTGCCGATATCCGGGAGGCGCACCCGAACATCGCCCTCGACATCGTCGCCTCCGACACGA
CCGAAAACCTGCTGTTTCACGAGGCTGACATCGCGCTGCGCATGTACCGACCCACGCAGCTTGATATGATCGCAAAGCAT
TTGGGGGATCTGCCGCTCGGCCTTTATGCGTCTGAGACATACATCGCACGCCACGGCACGCCGCACAGCGCCGACGATCT
GAAACACCACCAGATGGTCGGCTACGACCGCTCGGACCTGATCCTGCGCGGGATGCGTGAGATGGGGATGGAGGTGACCC
GCGCGTTCTTCACCACCTGCACCGATGATCAGGTCGCCTATTGGAATTTCGTCGCCGCCGGATGTGGCATCGGGATCGGG
CAGACCCTTGTGGCCGAGCGCACACCTGGCATGCGGCGGATCCTGCCTGATCTGCGGTTGCCCGTCTTACCCGTTTGGCT
GACAGCGCATCCCGGCCTCCGCCATCAGCCCCGTGTTCATGCTGTCTGGACCGCGCTCGACACCGCAATCACCCCGCTGC
TTTCTTGA

Upstream 100 bases:

>100_bases
CGGGTCATGGGGTATCTCCTGATTTTCGCTGCGCCCTGTCTGACCTATTCACCTACGCATTTATATTGCCTCTCAATGCA
ATACCAATATACACAAACGC

Downstream 100 bases:

>100_bases
CGCCCTGCACCCCGCGCGCTACCGCAGGCGCAACCCAATTTCACGAGGACCAGACCCATGACTGACCGCTCTTTGCTTAT
CCTTCCCGGCGACGGGATCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MDQDLDWTLLRAVLAVADTGSLSGAAAQLTRTQPTLGRQIKAAEQALGQPLFTRHARGLTPTPFCETLLPAAQQMNDAAK
AVSVLAAGQSPDTSGRVRLTASVFVTAHILPGILADIREAHPNIALDIVASDTTENLLFHEADIALRMYRPTQLDMIAKH
LGDLPLGLYASETYIARHGTPHSADDLKHHQMVGYDRSDLILRGMREMGMEVTRAFFTTCTDDQVAYWNFVAAGCGIGIG
QTLVAERTPGMRRILPDLRLPVLPVWLTAHPGLRHQPRVHAVWTALDTAITPLLS

Sequences:

>Translated_295_residues
MDQDLDWTLLRAVLAVADTGSLSGAAAQLTRTQPTLGRQIKAAEQALGQPLFTRHARGLTPTPFCETLLPAAQQMNDAAK
AVSVLAAGQSPDTSGRVRLTASVFVTAHILPGILADIREAHPNIALDIVASDTTENLLFHEADIALRMYRPTQLDMIAKH
LGDLPLGLYASETYIARHGTPHSADDLKHHQMVGYDRSDLILRGMREMGMEVTRAFFTTCTDDQVAYWNFVAAGCGIGIG
QTLVAERTPGMRRILPDLRLPVLPVWLTAHPGLRHQPRVHAVWTALDTAITPLLS
>Mature_295_residues
MDQDLDWTLLRAVLAVADTGSLSGAAAQLTRTQPTLGRQIKAAEQALGQPLFTRHARGLTPTPFCETLLPAAQQMNDAAK
AVSVLAAGQSPDTSGRVRLTASVFVTAHILPGILADIREAHPNIALDIVASDTTENLLFHEADIALRMYRPTQLDMIAKH
LGDLPLGLYASETYIARHGTPHSADDLKHHQMVGYDRSDLILRGMREMGMEVTRAFFTTCTDDQVAYWNFVAAGCGIGIG
QTLVAERTPGMRRILPDLRLPVLPVWLTAHPGLRHQPRVHAVWTALDTAITPLLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=184, Percent_Identity=30.9782608695652, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787589, Length=187, Percent_Identity=28.8770053475936, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI145693193, Length=238, Percent_Identity=26.890756302521, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788626, Length=184, Percent_Identity=30.9782608695652, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32099; Mature: 32099

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQDLDWTLLRAVLAVADTGSLSGAAAQLTRTQPTLGRQIKAAEQALGQPLFTRHARGLT
CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHCCCCC
PTPFCETLLPAAQQMNDAAKAVSVLAAGQSPDTSGRVRLTASVFVTAHILPGILADIREA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHC
HPNIALDIVASDTTENLLFHEADIALRMYRPTQLDMIAKHLGDLPLGLYASETYIARHGT
CCCEEEEEEECCCCHHHEEEECCEEEEEECCCHHHHHHHHHCCCCCCEEECCEEEEECCC
PHSADDLKHHQMVGYDRSDLILRGMREMGMEVTRAFFTTCTDDQVAYWNFVAAGCGIGIG
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
QTLVAERTPGMRRILPDLRLPVLPVWLTAHPGLRHQPRVHAVWTALDTAITPLLS
HHHHHHCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDQDLDWTLLRAVLAVADTGSLSGAAAQLTRTQPTLGRQIKAAEQALGQPLFTRHARGLT
CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHCCCCC
PTPFCETLLPAAQQMNDAAKAVSVLAAGQSPDTSGRVRLTASVFVTAHILPGILADIREA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHC
HPNIALDIVASDTTENLLFHEADIALRMYRPTQLDMIAKHLGDLPLGLYASETYIARHGT
CCCEEEEEEECCCCHHHEEEECCEEEEEECCCHHHHHHHHHCCCCCCEEECCEEEEECCC
PHSADDLKHHQMVGYDRSDLILRGMREMGMEVTRAFFTTCTDDQVAYWNFVAAGCGIGIG
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
QTLVAERTPGMRRILPDLRLPVLPVWLTAHPGLRHQPRVHAVWTALDTAITPLLS
HHHHHHCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]