Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89052593

Identifier: 89052593

GI number: 89052593

Start: 93959

End: 94387

Strand: Direct

Name: 89052593

Synonym: Jann_0102

Alternate gene names: NA

Gene position: 93959-94387 (Clockwise)

Preceding gene: 89052592

Following gene: 89052594

Centisome position: 2.18

GC content: 58.97

Gene sequence:

>429_bases
ATGACGCACAACATTCAAGCAACCCGGGAAATCCCCGCCACGGCAAACGATCTATGGAAGACCGTCAGCCAGATGATTGG
CATGGAAACCTCGTGTCCCGGCTTGATCCGCGAGAGCGACGTGCTGGACGCCGACGGCACACAGCCACGCCGCAGCTGCG
TGATGCGAAATGGTGGCGCGTTGACAGAGCGTATTTTGCTGCGCGACGACGCAACCCGCACATTCATCTACGCTATCGAC
TCTCATCCGATGCCTGCGAAAATCGTCGTTGGCACGATCCGGATCGATGACCTAGGGGACGGCAAAAGTCAGGTATCATG
GGCCGCGGATATGGTTCTTGGTCCGGCTTCCGCCGACCATTTTGCGGGCATGGTGCAGGGTATGTATGAGGGCGGCCTCG
CCTCGCTCGAAGCGCATCACACGACATGA

Upstream 100 bases:

>100_bases
ACGTGGTCCGCCGTGCGATGTTGCGCTGACGTGTCTGGTCACAATCCGCCGCATTTCTCTCCCTCAAACCACTTGATCCA
ATCCTTGAAAGGACCTCCTC

Downstream 100 bases:

>100_bases
ATATCCAGACGTTCATGCTGCCTTCCCAGAAGGTTAGCCCCGAACTGGAAATCCTGCACGCTGACCTTCAGACCGAGGGT
CAACATCCACCAATTCTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MTHNIQATREIPATANDLWKTVSQMIGMETSCPGLIRESDVLDADGTQPRRSCVMRNGGALTERILLRDDATRTFIYAID
SHPMPAKIVVGTIRIDDLGDGKSQVSWAADMVLGPASADHFAGMVQGMYEGGLASLEAHHTT

Sequences:

>Translated_142_residues
MTHNIQATREIPATANDLWKTVSQMIGMETSCPGLIRESDVLDADGTQPRRSCVMRNGGALTERILLRDDATRTFIYAID
SHPMPAKIVVGTIRIDDLGDGKSQVSWAADMVLGPASADHFAGMVQGMYEGGLASLEAHHTT
>Mature_141_residues
THNIQATREIPATANDLWKTVSQMIGMETSCPGLIRESDVLDADGTQPRRSCVMRNGGALTERILLRDDATRTFIYAIDS
HPMPAKIVVGTIRIDDLGDGKSQVSWAADMVLGPASADHFAGMVQGMYEGGLASLEAHHTT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15326; Mature: 15194

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHNIQATREIPATANDLWKTVSQMIGMETSCPGLIRESDVLDADGTQPRRSCVMRNGGA
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
LTERILLRDDATRTFIYAIDSHPMPAKIVVGTIRIDDLGDGKSQVSWAADMVLGPASADH
HHHEEEECCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHEECCCCCHH
FAGMVQGMYEGGLASLEAHHTT
HHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
THNIQATREIPATANDLWKTVSQMIGMETSCPGLIRESDVLDADGTQPRRSCVMRNGGA
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
LTERILLRDDATRTFIYAIDSHPMPAKIVVGTIRIDDLGDGKSQVSWAADMVLGPASADH
HHHEEEECCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHEECCCCCHH
FAGMVQGMYEGGLASLEAHHTT
HHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA