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The map label for this gene is ycfQ [H]

Identifier: 89052588

GI number: 89052588

Start: 91593

End: 92159

Strand: Direct

Name: ycfQ [H]

Synonym: Jann_0097

Alternate gene names: 89052588

Gene position: 91593-92159 (Clockwise)

Preceding gene: 89052585

Following gene: 89052589

Centisome position: 2.12

GC content: 58.91

Gene sequence:

>567_bases
ATGCCCCGCCCTCGTCTGTTCGACCCCGATACTGCCCTTGATGCGCTGGTTGGCGTTTTCTGGGCGAAGGGGTATTCGGA
CGCGTCCTATGACGACATCGTCTCTGCCAGCGGGGTGAGCCGGAAAAGCCTTTATGCGGCGTTCGGTGATAAGCAGGCGC
TTTTTACCAAGGCCCTGCAACGCTACCGCACGGATCACGCGACCCGCTTTTTGGCTGATCTCGACAACGAAGACATCTCC
CTTGACGGGATCGCGTCGATGTTCCGGCGTCTGGGTGAGCTGGCGACGTCCGATGCAGGCAGCATGGGCTGTCTGATGGC
AAACACGGCCACATCTCCCGCGATTAAAACACCAGAGGTTAAAGACCAACTGGACCGCCACTTGGAGATAACGACAAAGC
GTTTCAGCACGGCCCTCGCGCGGGCGGGCTGTCCGGCAAAACGGATCAAGGCAAAGGCGCTTTATCTCACCGGCGCATTG
CAAGGCTTGTTTCTCCTTGCCCATGCACGCGCGCAACCCGACTTGATTGAGGCCTATGTCAATGGCGTCGTGGACCAGAT
CGCATGA

Upstream 100 bases:

>100_bases
TCAAGGCGGCTGAACATCAGGGTGTCATCTCGATCGTCAACATTGACACCGCTGCCCGAATATCAAATAAGAGAACAAGC
GTTCCCTTATAGGTGATCTC

Downstream 100 bases:

>100_bases
AGTTCCGACATTTACCCATTTATAGAATGAGCATTCTCTATCGTGAGGCCACCATGTTCAGAGCGCTGGAGGTCTCACGA
TGATGGCAACGGTCTCAGCA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MPRPRLFDPDTALDALVGVFWAKGYSDASYDDIVSASGVSRKSLYAAFGDKQALFTKALQRYRTDHATRFLADLDNEDIS
LDGIASMFRRLGELATSDAGSMGCLMANTATSPAIKTPEVKDQLDRHLEITTKRFSTALARAGCPAKRIKAKALYLTGAL
QGLFLLAHARAQPDLIEAYVNGVVDQIA

Sequences:

>Translated_188_residues
MPRPRLFDPDTALDALVGVFWAKGYSDASYDDIVSASGVSRKSLYAAFGDKQALFTKALQRYRTDHATRFLADLDNEDIS
LDGIASMFRRLGELATSDAGSMGCLMANTATSPAIKTPEVKDQLDRHLEITTKRFSTALARAGCPAKRIKAKALYLTGAL
QGLFLLAHARAQPDLIEAYVNGVVDQIA
>Mature_187_residues
PRPRLFDPDTALDALVGVFWAKGYSDASYDDIVSASGVSRKSLYAAFGDKQALFTKALQRYRTDHATRFLADLDNEDISL
DGIASMFRRLGELATSDAGSMGCLMANTATSPAIKTPEVKDQLDRHLEITTKRFSTALARAGCPAKRIKAKALYLTGALQ
GLFLLAHARAQPDLIEAYVNGVVDQIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=127, Percent_Identity=34.6456692913386, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20400; Mature: 20269

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPRLFDPDTALDALVGVFWAKGYSDASYDDIVSASGVSRKSLYAAFGDKQALFTKALQ
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHH
RYRTDHATRFLADLDNEDISLDGIASMFRRLGELATSDAGSMGCLMANTATSPAIKTPEV
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHH
KDQLDRHLEITTKRFSTALARAGCPAKRIKAKALYLTGALQGLFLLAHARAQPDLIEAYV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
NGVVDQIA
HHHHHHCC
>Mature Secondary Structure 
PRPRLFDPDTALDALVGVFWAKGYSDASYDDIVSASGVSRKSLYAAFGDKQALFTKALQ
CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHH
RYRTDHATRFLADLDNEDISLDGIASMFRRLGELATSDAGSMGCLMANTATSPAIKTPEV
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHH
KDQLDRHLEITTKRFSTALARAGCPAKRIKAKALYLTGALQGLFLLAHARAQPDLIEAYV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
NGVVDQIA
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]