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The map label for this gene is petR [H]

Identifier: 89052583

GI number: 89052583

Start: 86924

End: 87643

Strand: Reverse

Name: petR [H]

Synonym: Jann_0092

Alternate gene names: 89052583

Gene position: 87643-86924 (Counterclockwise)

Preceding gene: 89052584

Following gene: 89052582

Centisome position: 2.03

GC content: 63.06

Gene sequence:

>720_bases
ATGAATATGAGCATGGACATAGGCGCGCATCTTCTGATCGTGGATGATGATGAGCGTATCCGCTCGCTCCTTCAGAAGTT
CCTGATGCGCAACGGGTTCATGGCGTCTGGCGCACGCGATGCCGGGCAGGCGCGTGTTCTTCTGGCGGGGCTGAGCTTCG
ACATGATCGTGCTCGATGTGATGATGCCGGGTGAAGATGGGCTGAGCCTGTGTCGCGATATCCGCGCGACGTCTTCCACC
CCGATCCTGTTGCTGACAGCCAATGGCGAGCCCGATGACCGGATCGAGGGGCTGGAGGCCGGGGCGGACGATTACCTTTC
CAAACCGTTCGAGCCCAAGGAATTGCTGCTGCGGATCAACGCGATCCTGCGCCGCATGCCCGCGCCGACCGAGGACGCGA
CCGTGCCCCAGGTCATCCACCTTGGCCCCGTGCGCTATGATATCGAGCGCGGTGAAATGTGGCAGGGCCAGGACCCCGTG
CGCCTGACCGCGACGGAGGCTGCGTTGATGCGGATCTTCGCGCATCAACCGGCGGAGGCACTGTCGCGGGGTGAGTTGGT
GAGCCTTCTGAACCGCGACAAGGTGGGTGGAGAGCCGGTGCAGGAACGGGCCGTAGACGTGCAGATCACACGGCTGCGGC
GCAAGATCGAGATGAACCCGAAACAGCCCCGCTACCTGCAGACCGTGCGCGGAGCGGGCTATATGCTGTCGCCTGATTGA

Upstream 100 bases:

>100_bases
ATGCCGGGCCAGATGCGGTGTCGGGATTCCGCGCCGTTCTGGAAGAGATGATGGACCCCGACATGCGCCGCCACTACCTT
GAAGGTGTGGAGCAAAACCA

Downstream 100 bases:

>100_bases
GGGGGATGCTCAAGGTTGAGCATAGGGGTCAACACCTTGATAAAGTGGTATTTTCGCCATATTCAAATAATCTGCCTGCG
GTGAACCGGCACCGCGCCCG

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MNMSMDIGAHLLIVDDDERIRSLLQKFLMRNGFMASGARDAGQARVLLAGLSFDMIVLDVMMPGEDGLSLCRDIRATSST
PILLLTANGEPDDRIEGLEAGADDYLSKPFEPKELLLRINAILRRMPAPTEDATVPQVIHLGPVRYDIERGEMWQGQDPV
RLTATEAALMRIFAHQPAEALSRGELVSLLNRDKVGGEPVQERAVDVQITRLRRKIEMNPKQPRYLQTVRGAGYMLSPD

Sequences:

>Translated_239_residues
MNMSMDIGAHLLIVDDDERIRSLLQKFLMRNGFMASGARDAGQARVLLAGLSFDMIVLDVMMPGEDGLSLCRDIRATSST
PILLLTANGEPDDRIEGLEAGADDYLSKPFEPKELLLRINAILRRMPAPTEDATVPQVIHLGPVRYDIERGEMWQGQDPV
RLTATEAALMRIFAHQPAEALSRGELVSLLNRDKVGGEPVQERAVDVQITRLRRKIEMNPKQPRYLQTVRGAGYMLSPD
>Mature_239_residues
MNMSMDIGAHLLIVDDDERIRSLLQKFLMRNGFMASGARDAGQARVLLAGLSFDMIVLDVMMPGEDGLSLCRDIRATSST
PILLLTANGEPDDRIEGLEAGADDYLSKPFEPKELLLRINAILRRMPAPTEDATVPQVIHLGPVRYDIERGEMWQGQDPV
RLTATEAALMRIFAHQPAEALSRGELVSLLNRDKVGGEPVQERAVDVQITRLRRKIEMNPKQPRYLQTVRGAGYMLSPD

Specific function: Necessary for photosynthetic and respiratory growth. Probable promoter-specific protein mediating the interaction between DNA and RNA polymerase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=241, Percent_Identity=43.9834024896266, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1786599, Length=231, Percent_Identity=37.6623376623377, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1788394, Length=233, Percent_Identity=35.1931330472103, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1786784, Length=234, Percent_Identity=35.8974358974359, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1787229, Length=232, Percent_Identity=32.7586206896552, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1787375, Length=227, Percent_Identity=34.3612334801762, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1790863, Length=236, Percent_Identity=29.6610169491525, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI2367329, Length=236, Percent_Identity=35.5932203389831, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1786911, Length=228, Percent_Identity=32.4561403508772, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082012, Length=227, Percent_Identity=29.9559471365639, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI145693140, Length=235, Percent_Identity=30.2127659574468, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790860, Length=233, Percent_Identity=32.1888412017167, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790552, Length=231, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789402, Length=228, Percent_Identity=30.7017543859649, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1788550, Length=116, Percent_Identity=34.4827586206897, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790299, Length=139, Percent_Identity=28.7769784172662, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790437, Length=131, Percent_Identity=32.824427480916, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26604; Mature: 26604

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMSMDIGAHLLIVDDDERIRSLLQKFLMRNGFMASGARDAGQARVLLAGLSFDMIVLDV
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEE
MMPGEDGLSLCRDIRATSSTPILLLTANGEPDDRIEGLEAGADDYLSKPFEPKELLLRIN
ECCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCHHHHCCCCCHHHHHHHHH
AILRRMPAPTEDATVPQVIHLGPVRYDIERGEMWQGQDPVRLTATEAALMRIFAHQPAEA
HHHHHCCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHCCCHHH
LSRGELVSLLNRDKVGGEPVQERAVDVQITRLRRKIEMNPKQPRYLQTVRGAGYMLSPD
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEECCC
>Mature Secondary Structure
MNMSMDIGAHLLIVDDDERIRSLLQKFLMRNGFMASGARDAGQARVLLAGLSFDMIVLDV
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEE
MMPGEDGLSLCRDIRATSSTPILLLTANGEPDDRIEGLEAGADDYLSKPFEPKELLLRIN
ECCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCHHHHCCCCCHHHHHHHHH
AILRRMPAPTEDATVPQVIHLGPVRYDIERGEMWQGQDPVRLTATEAALMRIFAHQPAEA
HHHHHCCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHCCCHHH
LSRGELVSLLNRDKVGGEPVQERAVDVQITRLRRKIEMNPKQPRYLQTVRGAGYMLSPD
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1323023 [H]