| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is yihX [C]
Identifier: 89052544
GI number: 89052544
Start: 48209
End: 48832
Strand: Direct
Name: yihX [C]
Synonym: Jann_0053
Alternate gene names: 89052544
Gene position: 48209-48832 (Clockwise)
Preceding gene: 89052543
Following gene: 89052545
Centisome position: 1.12
GC content: 61.7
Gene sequence:
>624_bases ATGGCGGTCTCAGCGGTCATCTTCGACATCGGCAACGTGCTGATCGAGTGGCAACCCGAACGTCACTACGACCGCGTGAT CGGTGAGGCACAGCGGCGAGAGATGTTTGCGGCCGTGGATCTGCACGGGATGAATGACCGCGTGGACCGGGGCGAGGATT TTCGGACCACGGTGCAGGACTGTGCCGCCGCCCACCCGGAATTCCATGACGAGATCATGCTGTGGCATGACGATTGGATC CACATGGCCACCCCCGCCATTCCCCGTTCCGCGGTGCTGTTGCGCAATTTGCGTCATCGCGGCGTGCCCGTCTTTGCGCT GTCCAACTTCGGGATCCAGACGTTTGAGATCGCCAAGCCAACCTATCCGGTCCTGGCCGAGTTCGACCGCGCCTATATCT CGGGTCATATGGGCGTCACCAAGCCCGATGCGGACATCTACGCACAGGTAGAGGCGGATTGTGGCCTAGCGCCCGAGAGC CTGCTGTTCACCGACGATAGGGACGATAATATCAAGGCCGCACAGCGGCGTGGGTGGCAGACCCATCTGTTTGACGGGCC CGAGGGGTTGGCCAAACGGCTGGTGCAAGACGGGCTGTTGAGCGAGAAGGATGCGGGGCTATGA
Upstream 100 bases:
>100_bases CACTTCGGATGCAGCCGGGATACGACCATTCCTATTTCTTCGTGTCGAGCTTCATGGAAGACCATGTCGCGTTCCACGCC GACGCGCTCTACGCAGTCTG
Downstream 100 bases:
>100_bases CGCTGAATGCTGAAATGGGGCGTCGCGTCCCATGATGATCATCGGACCTGAGGCAGAAGAGCATCTGGATTGGATCGCGC TGTGCGCCGCCATCGAGGCG
Product: HAD family hydrolase
Products: NA
Alternate protein names: HAD-Superfamily Hydrolase; Hydrolase; Haloacid Dehalogenase-Like Hydrolase; HAD Superfamily Hydrolase; Alpha Beta Hydrolase; HAD Hydrolase Family IA; 2-Haloacid Dehalogenase; Hydrolase Haloacid Dehalogenase-Like Family Protein; Haloacid Dehalogenase Superfamily Protein; Hydrolase Protein; Haloacid Dehalogenase-Like Family Hydrolase; HAD-Superfamily Hydrolase Subfamily IA; Hydrolase Haloacid Dehalogenase-Like Family; Haloacid Dehalogenase-Like Hydrolase Protein; Hydrolase Protein Haloacid Dehalogenase-Like Family; HAD Family Phosphatase; HAD Hydrolase Superfamily Protein
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MAVSAVIFDIGNVLIEWQPERHYDRVIGEAQRREMFAAVDLHGMNDRVDRGEDFRTTVQDCAAAHPEFHDEIMLWHDDWI HMATPAIPRSAVLLRNLRHRGVPVFALSNFGIQTFEIAKPTYPVLAEFDRAYISGHMGVTKPDADIYAQVEADCGLAPES LLFTDDRDDNIKAAQRRGWQTHLFDGPEGLAKRLVQDGLLSEKDAGL
Sequences:
>Translated_207_residues MAVSAVIFDIGNVLIEWQPERHYDRVIGEAQRREMFAAVDLHGMNDRVDRGEDFRTTVQDCAAAHPEFHDEIMLWHDDWI HMATPAIPRSAVLLRNLRHRGVPVFALSNFGIQTFEIAKPTYPVLAEFDRAYISGHMGVTKPDADIYAQVEADCGLAPES LLFTDDRDDNIKAAQRRGWQTHLFDGPEGLAKRLVQDGLLSEKDAGL >Mature_206_residues AVSAVIFDIGNVLIEWQPERHYDRVIGEAQRREMFAAVDLHGMNDRVDRGEDFRTTVQDCAAAHPEFHDEIMLWHDDWIH MATPAIPRSAVLLRNLRHRGVPVFALSNFGIQTFEIAKPTYPVLAEFDRAYISGHMGVTKPDADIYAQVEADCGLAPESL LFTDDRDDNIKAAQRRGWQTHLFDGPEGLAKRLVQDGLLSEKDAGL
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23352; Mature: 23220
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVSAVIFDIGNVLIEWQPERHYDRVIGEAQRREMFAAVDLHGMNDRVDRGEDFRTTVQD CCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHH CAAAHPEFHDEIMLWHDDWIHMATPAIPRSAVLLRNLRHRGVPVFALSNFGIQTFEIAKP HHHCCCCCCCCEEEEECCCCEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEEECCC TYPVLAEFDRAYISGHMGVTKPDADIYAQVEADCGLAPESLLFTDDRDDNIKAAQRRGWQ CCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCHHHHHHCCCE THLFDGPEGLAKRLVQDGLLSEKDAGL EECCCCHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure AVSAVIFDIGNVLIEWQPERHYDRVIGEAQRREMFAAVDLHGMNDRVDRGEDFRTTVQD CHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHH CAAAHPEFHDEIMLWHDDWIHMATPAIPRSAVLLRNLRHRGVPVFALSNFGIQTFEIAKP HHHCCCCCCCCEEEEECCCCEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEEECCC TYPVLAEFDRAYISGHMGVTKPDADIYAQVEADCGLAPESLLFTDDRDDNIKAAQRRGWQ CCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCHHHHHHCCCE THLFDGPEGLAKRLVQDGLLSEKDAGL EECCCCHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA