Click here to switch to the map view.

The map label for this gene is mdcF [H]

Identifier: 89052542

GI number: 89052542

Start: 46326

End: 47267

Strand: Direct

Name: mdcF [H]

Synonym: Jann_0051

Alternate gene names: 89052542

Gene position: 46326-47267 (Clockwise)

Preceding gene: 89052540

Following gene: 89052543

Centisome position: 1.07

GC content: 60.72

Gene sequence:

>942_bases
ATGATGTTAGAGATCTTCCTGAAGACGCTACCATTCTTCGCCCTGATCGCCCTGGGCTTTCAGGCCTGCCGGACGGGTTT
CTTCACGTCGGAGGCTGCGGCCTACCTCACCAAGTTCGTGTTCTATTTCGCCCTGTCCGCGATGCTGTTTCGCTTTGCCG
CGAACCTGTCGCTGACCGAGATCTTCGACTGGCAGTTTGTGGGCGCGTATCTGACGGCCTGTTTTGTCGTGTATTTCCTC
GCCACAGCGGTTGCGATGATCCGCAAGCGCCCCGTCACCGAAGCCGCGTTCGAGGCGCAATGCGCTGTCATCGGAAACGT
CGGATTTCTGGGCGTGCCGATGCTGGTCGTCCTGTTGGGAGAGGCTGCGGCAGGCCCGATCCTGTTGGTTCTTGCGCTGG
ACCTGATCGTCTTCTCCAGCCTGATCGTGATCATCGTCACCGGAAGCCGCGATGGGCGGATGTCCTTGGGCGTCCTGCGT
ACCGTTGGGGTGGGCTTGTTGAAAAACCCCATGATCGTATCGATCTCTCTGGGATTGGCGTGGTCCACCACGGGCCTTGC
TGTGCCGGGACCCGTCAATGAATTCCTCGCCATTCTGGGCGCTGCGGCGACACCCGGAGCGCTTTTTGCCATCGGGGCCT
CCCTCGCTGGAAAGTCGGCGGAAAGGATGTCCGTGGCGGGTTGGCTGACCTTCTGCAAACTGATCCTCCACCCGCTGGCC
GTCGCCATCTGCGCCCTTTGGCTGTTCGATGTCCCCGATTTTGAGGCCGCCGTGATGATTGCTGCCGCCTCCCTTCCCGT
GGCAGGCAACGTCTATATCCTGGCGCAACATTATGGCGTAGCGCCCCAGCGGGTATCGGCGACGATCCTGATCTCCACGG
CGGTTTCAATTCTGACGGTCTCGGCGGTCATCGCATGGCTGGCACCGCTTTCGGGCATGTAA

Upstream 100 bases:

>100_bases
CTCCTGCCATCTATTGTAAACTGCTTAGTTCAGTTTCGGCAAGCTGGACGTTTGGTCAGGTGGTCCGCTGGACAGTTCAG
GACGCTTAGAATAGCCGTTG

Downstream 100 bases:

>100_bases
GCCGCCTGCAAAGGATGAGCAAACATCCCCGGCGACGAGATGTAGACGTTGCACCGCCCACCGCGCCCGCGTTACGTGGG
GGGAGGCGATTTGGGGGAGC

Product: auxin efflux carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MMLEIFLKTLPFFALIALGFQACRTGFFTSEAAAYLTKFVFYFALSAMLFRFAANLSLTEIFDWQFVGAYLTACFVVYFL
ATAVAMIRKRPVTEAAFEAQCAVIGNVGFLGVPMLVVLLGEAAAGPILLVLALDLIVFSSLIVIIVTGSRDGRMSLGVLR
TVGVGLLKNPMIVSISLGLAWSTTGLAVPGPVNEFLAILGAAATPGALFAIGASLAGKSAERMSVAGWLTFCKLILHPLA
VAICALWLFDVPDFEAAVMIAAASLPVAGNVYILAQHYGVAPQRVSATILISTAVSILTVSAVIAWLAPLSGM

Sequences:

>Translated_313_residues
MMLEIFLKTLPFFALIALGFQACRTGFFTSEAAAYLTKFVFYFALSAMLFRFAANLSLTEIFDWQFVGAYLTACFVVYFL
ATAVAMIRKRPVTEAAFEAQCAVIGNVGFLGVPMLVVLLGEAAAGPILLVLALDLIVFSSLIVIIVTGSRDGRMSLGVLR
TVGVGLLKNPMIVSISLGLAWSTTGLAVPGPVNEFLAILGAAATPGALFAIGASLAGKSAERMSVAGWLTFCKLILHPLA
VAICALWLFDVPDFEAAVMIAAASLPVAGNVYILAQHYGVAPQRVSATILISTAVSILTVSAVIAWLAPLSGM
>Mature_313_residues
MMLEIFLKTLPFFALIALGFQACRTGFFTSEAAAYLTKFVFYFALSAMLFRFAANLSLTEIFDWQFVGAYLTACFVVYFL
ATAVAMIRKRPVTEAAFEAQCAVIGNVGFLGVPMLVVLLGEAAAGPILLVLALDLIVFSSLIVIIVTGSRDGRMSLGVLR
TVGVGLLKNPMIVSISLGLAWSTTGLAVPGPVNEFLAILGAAATPGALFAIGASLAGKSAERMSVAGWLTFCKLILHPLA
VAICALWLFDVPDFEAAVMIAAASLPVAGNVYILAQHYGVAPQRVSATILISTAVSILTVSAVIAWLAPLSGM

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 32923; Mature: 32923

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLEIFLKTLPFFALIALGFQACRTGFFTSEAAAYLTKFVFYFALSAMLFRFAANLSLTE
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IFDWQFVGAYLTACFVVYFLATAVAMIRKRPVTEAAFEAQCAVIGNVGFLGVPMLVVLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCHHHHHHHHHHHHC
EAAAGPILLVLALDLIVFSSLIVIIVTGSRDGRMSLGVLRTVGVGLLKNPMIVSISLGLA
CCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCE
WSTTGLAVPGPVNEFLAILGAAATPGALFAIGASLAGKSAERMSVAGWLTFCKLILHPLA
ECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
VAICALWLFDVPDFEAAVMIAAASLPVAGNVYILAQHYGVAPQRVSATILISTAVSILTV
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
SAVIAWLAPLSGM
HHHHHHHHHCCCC
>Mature Secondary Structure
MMLEIFLKTLPFFALIALGFQACRTGFFTSEAAAYLTKFVFYFALSAMLFRFAANLSLTE
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IFDWQFVGAYLTACFVVYFLATAVAMIRKRPVTEAAFEAQCAVIGNVGFLGVPMLVVLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCHHHHHHHHHHHHC
EAAAGPILLVLALDLIVFSSLIVIIVTGSRDGRMSLGVLRTVGVGLLKNPMIVSISLGLA
CCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCE
WSTTGLAVPGPVNEFLAILGAAATPGALFAIGASLAGKSAERMSVAGWLTFCKLILHPLA
ECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
VAICALWLFDVPDFEAAVMIAAASLPVAGNVYILAQHYGVAPQRVSATILISTAVSILTV
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
SAVIAWLAPLSGM
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]