| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is gyrB
Identifier: 89052495
GI number: 89052495
Start: 3950
End: 6367
Strand: Direct
Name: gyrB
Synonym: Jann_0004
Alternate gene names: 89052495
Gene position: 3950-6367 (Clockwise)
Preceding gene: 89052494
Following gene: 89052496
Centisome position: 0.09
GC content: 60.5
Gene sequence:
>2418_bases ATGAACGACATACCCGCGAGCGGTGACGACTACGGCGCTGATTCCATCAAAGTTCTCAAAGGGTTGGAGGCGGTTCGTAA GCGCCCCGGCATGTATATCGGCGATACCGATGACGGCTCTGGTCTGCACCACATGGTCTATGAGGTCGTCGACAACGGCA TCGACGAGGCTCTGGCCGGTCACGCGGACGCCGTGACAGTGACGCTGCACGCCGACAGCAGCGTTTCGGTGAGCGATAAT GGACGCGGCATTCCCGTTGGCATCCACGAAGAAGAAGGTGTCTCCGCCGCTGAAGTCATCATGACCCAGCTTCATGCGGG CGGTAAGTTCGACAGCAACTCCTACAAGGTCTCGGGCGGTCTGCACGGCGTCGGCGTATCCGTGGTGAACGCCCTGTCCG ACTGGTTGGAGCTGCGGATCTGGCGTGACGGCAAGGAACATATCGCGCGGTTTGAGGGCGGCTTTACCACCAAACCATTG GAAGTCGTCAGCGAGTGCGGCGACCGCACCGGCACGGAAGTGCGCTTCATGGCCTCGACTGAGACATTCTCCAACCTCGA TTACGTGTTCAAAACCCTTGAAAACCGTTTGCGGGAACTTGCATTCCTGAACTCGGGCGTGCGGATCATCCTGCGCGATG AACGGCCCGCCGAGGCATTGGAATCGGACCTGTTTTATGAAGGTGGCGTGCGGGAATTCGTCCGCTATCTGGACCGCTCC AAGACATCCGCCATGGAAGAGCCGATCTTCATCACCGGCGAGAAGGACGATATCGGCGTCGAAGTCGCCATGTGGTGGAA CGACAGCTACCATGAGAACGTCCTGCCGTTTACCAACAACATCCCCCAGCGGGACGGCGGCACCCACCTGGCGGGCTTCC GGGGGGCACTGACGCGGACGATCAACCTTTATGCGCAGTCCTCGGGCATCGCGAAGAAAGAGAAGGTCAGCTTCACCGGC GATGATGCGCGTGAGGGCCTGACCTGTGTTCTGTCCGTCAAAGTGCCAGATCCGAAATTCAGTTCTCAGACCAAAGACAA GCTCGTCTCGTCCGAGGTGCGCCCCGCCGTCGAAGGCCTGGTGAACGAGAAGCTGCAAGAGTGGTTTGAAGAGCATCCCC ACGAGGCGCGCGTGATCGTGTCCAAGATCGTGGAAGCCGCACTGGCCCGCGAAGCCGCCCGCAAAGCGCGGGAATTGACC CGGCGCAAGACGGCGATGGATATCGCCTCGCTCCCCGGGAAGCTGGCCGATTGTCAGGAGAAAGATCCGTCCAAATCCGA GCTGTTCCTGGTGGAGGGTGACAGCGCCGGTGGCTCTGCCAAGCAGGGCCGCTCCCGTCATAACCAGGCGGTCCTGCCCC TGCGCGGTAAAATCCTGAACGTGGAACGCGCGCGCTTTGACCGGATGTTGGGAAGCCAGGAAATCGGGACGCTGATCACC GCCCTTGGCACTGGCATTGGCCGGGACGAGTTCAACATCGACAAGCTGCGCTACCACAAGATCATCATCATGACCGACGC CGACGTTGACGGCGCGCATATCCGGACGCTTTTGCTGACCTTCTTCTTCCGCCAGATGCCGGAGCTGATTGAAGGCGGCT ACCTCTATATCGCGCAGCCGCCGCTTTATAAGGTCAGCCGCGGCAAGTCCGAGGTCTATCTGAAGGACGAAACCGCGCTG GAAGATTATCTGGTTGCCCAAGGTGTCGAAGGCGCGTCGCTGCGTCTGTCCTCGGGAGAAGAGATTGCCGGGCAGGATCT GGCCCGCGTCGTCACCGGCGCGCGCAACTTCAAGCGGATCCTTGATGCGTTTCCCACACATTACCCCCGCCGCATCGTCG AACAGGCCGCACTTGCCGGTGCATTTGACGCGGGCAAAGCCGATGCGGATCTGCAAGGGGTCGCCGATGATGTGGCCAAG CGCCTCGATCTGGTTGCGGTGGAATATGAGCGGGGCTGGAATGGCCGCATTACCCAGGATCATGGCATCCGCCTGAGCCG CGTTTTGCGCGGTGTGGAAGAGATCCGCACCCTTGACGGCGCAGTCCTGCGATCCGGTGAGGCGCGCAAGCTGGCCGAAG TCTCCAAGGACAGCCGCACCGTTTACCAGGACCCTGCGACGCTGACCCGCAAGGATCGGGTACAGTTGATCCACGGCCCG ACAGAGCTTCTGAAGGCGATCCTGGATGAAGGCGCCAAGGGCCAGCAGATGCAGCGCTACAAGGGTCTGGGTGAAATGAA CCCGGACCAGCTGTGGGAAACCACGCTGGATCACGAAGCCCGCACGCTGTTGCAGGTGAAGATCGACGATCTGGCCGATG CCGACGACATCTTCACCAAACTGATGGGCGATGTGGTGGAGCCCCGGCGGGAATTCATCCAGAATAATGCGCTCAGCGTG GAAAATTTGGATTTCTAG
Upstream 100 bases:
>100_bases GGCGAAAGCCAGGTCGCCGCCCCCTAAATCTTGTGTTCCTCCCGTGACATTGCTTGCCAAAATGCGTATATATTGAGCAA CAGAACGGGACAAAAAAGAC
Downstream 100 bases:
>100_bases TTGGCGACTAAGGCCCCAACCCTGTCAAAGGGGTCCGAGGATCAAAACATGTAGGGCGGGACTTGCGGCGCAGCCTGTCC TACACTTCCTTCTGTAGCAG
Product: DNA gyrase subunit B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 805; Mature: 805
Protein sequence:
>805_residues MNDIPASGDDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADAVTVTLHADSSVSVSDN GRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSDWLELRIWRDGKEHIARFEGGFTTKPL EVVSECGDRTGTEVRFMASTETFSNLDYVFKTLENRLRELAFLNSGVRIILRDERPAEALESDLFYEGGVREFVRYLDRS KTSAMEEPIFITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTRTINLYAQSSGIAKKEKVSFTG DDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLQEWFEEHPHEARVIVSKIVEAALAREAARKARELT RRKTAMDIASLPGKLADCQEKDPSKSELFLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLGSQEIGTLIT ALGTGIGRDEFNIDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQPPLYKVSRGKSEVYLKDETAL EDYLVAQGVEGASLRLSSGEEIAGQDLARVVTGARNFKRILDAFPTHYPRRIVEQAALAGAFDAGKADADLQGVADDVAK RLDLVAVEYERGWNGRITQDHGIRLSRVLRGVEEIRTLDGAVLRSGEARKLAEVSKDSRTVYQDPATLTRKDRVQLIHGP TELLKAILDEGAKGQQMQRYKGLGEMNPDQLWETTLDHEARTLLQVKIDDLADADDIFTKLMGDVVEPRREFIQNNALSV ENLDF
Sequences:
>Translated_805_residues MNDIPASGDDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADAVTVTLHADSSVSVSDN GRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSDWLELRIWRDGKEHIARFEGGFTTKPL EVVSECGDRTGTEVRFMASTETFSNLDYVFKTLENRLRELAFLNSGVRIILRDERPAEALESDLFYEGGVREFVRYLDRS KTSAMEEPIFITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTRTINLYAQSSGIAKKEKVSFTG DDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLQEWFEEHPHEARVIVSKIVEAALAREAARKARELT RRKTAMDIASLPGKLADCQEKDPSKSELFLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLGSQEIGTLIT ALGTGIGRDEFNIDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQPPLYKVSRGKSEVYLKDETAL EDYLVAQGVEGASLRLSSGEEIAGQDLARVVTGARNFKRILDAFPTHYPRRIVEQAALAGAFDAGKADADLQGVADDVAK RLDLVAVEYERGWNGRITQDHGIRLSRVLRGVEEIRTLDGAVLRSGEARKLAEVSKDSRTVYQDPATLTRKDRVQLIHGP TELLKAILDEGAKGQQMQRYKGLGEMNPDQLWETTLDHEARTLLQVKIDDLADADDIFTKLMGDVVEPRREFIQNNALSV ENLDF >Mature_805_residues MNDIPASGDDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADAVTVTLHADSSVSVSDN GRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSDWLELRIWRDGKEHIARFEGGFTTKPL EVVSECGDRTGTEVRFMASTETFSNLDYVFKTLENRLRELAFLNSGVRIILRDERPAEALESDLFYEGGVREFVRYLDRS KTSAMEEPIFITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTRTINLYAQSSGIAKKEKVSFTG DDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLQEWFEEHPHEARVIVSKIVEAALAREAARKARELT RRKTAMDIASLPGKLADCQEKDPSKSELFLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLGSQEIGTLIT ALGTGIGRDEFNIDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQPPLYKVSRGKSEVYLKDETAL EDYLVAQGVEGASLRLSSGEEIAGQDLARVVTGARNFKRILDAFPTHYPRRIVEQAALAGAFDAGKADADLQGVADDVAK RLDLVAVEYERGWNGRITQDHGIRLSRVLRGVEEIRTLDGAVLRSGEARKLAEVSKDSRTVYQDPATLTRKDRVQLIHGP TELLKAILDEGAKGQQMQRYKGLGEMNPDQLWETTLDHEARTLLQVKIDDLADADDIFTKLMGDVVEPRREFIQNNALSV ENLDF
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0187
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the type II topoisomerase family [H]
Homologues:
Organism=Homo sapiens, GI19913408, Length=573, Percent_Identity=24.2582897033159, Blast_Score=128, Evalue=2e-29, Organism=Homo sapiens, GI19913406, Length=590, Percent_Identity=24.7457627118644, Blast_Score=127, Evalue=5e-29, Organism=Escherichia coli, GI48994957, Length=807, Percent_Identity=56.8773234200744, Blast_Score=871, Evalue=0.0, Organism=Escherichia coli, GI1789408, Length=545, Percent_Identity=41.651376146789, Blast_Score=393, Evalue=1e-110, Organism=Caenorhabditis elegans, GI17535065, Length=581, Percent_Identity=24.0963855421687, Blast_Score=124, Evalue=2e-28, Organism=Caenorhabditis elegans, GI212645845, Length=513, Percent_Identity=24.9512670565302, Blast_Score=108, Evalue=2e-23, Organism=Caenorhabditis elegans, GI212645657, Length=165, Percent_Identity=33.9393939393939, Blast_Score=77, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6324241, Length=603, Percent_Identity=25.5389718076285, Blast_Score=127, Evalue=9e-30, Organism=Drosophila melanogaster, GI17136538, Length=553, Percent_Identity=26.7631103074141, Blast_Score=134, Evalue=3e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011557 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR001241 - InterPro: IPR013759 - InterPro: IPR002288 - InterPro: IPR013506 - InterPro: IPR013760 - InterPro: IPR018522 [H]
Pfam domain/function: PF00204 DNA_gyraseB; PF00986 DNA_gyraseB_C; PF02518 HATPase_c [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 88980; Mature: 88980
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: PS00177 TOPOISOMERASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDIPASGDDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHCCHHHHHCC HADAVTVTLHADSSVSVSDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG CCCEEEEEEECCCEEEECCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCC LHGVGVSVVNALSDWLELRIWRDGKEHIARFEGGFTTKPLEVVSECGDRTGTEVRFMAST CCHHHHHHHHHHHHHHHEEHCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEECC ETFSNLDYVFKTLENRLRELAFLNSGVRIILRDERPAEALESDLFYEGGVREFVRYLDRS CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHH KTSAMEEPIFITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTRT HHHHHCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH INLYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL HEEEECCCCCCCHHCEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH VNEKLQEWFEEHPHEARVIVSKIVEAALAREAARKARELTRRKTAMDIASLPGKLADCQE HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCC KDPSKSELFLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLGSQEIGTLIT CCCCCCEEEEEECCCCCCCCHHCHHHCCCEEEECCCCEECHHHHHHHHHHCHHHHHHHHH ALGTGIGRDEFNIDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQP HHHCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECC PLYKVSRGKSEVYLKDETALEDYLVAQGVEGASLRLSSGEEIAGQDLARVVTGARNFKRI CCCHHCCCCCEEEECCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH LDAFPTHYPRRIVEQAALAGAFDAGKADADLQGVADDVAKRLDLVAVEYERGWNGRITQD HHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCC HGIRLSRVLRGVEEIRTLDGAVLRSGEARKLAEVSKDSRTVYQDPATLTRKDRVQLIHGP CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEECCCCHHCCCCCEEEEECH TELLKAILDEGAKGQQMQRYKGLGEMNPDQLWETTLDHEARTLLQVKIDDLADADDIFTK HHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEEEHHCCCHHHHHHH LMGDVVEPRREFIQNNALSVENLDF HHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MNDIPASGDDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHCCHHHHHCC HADAVTVTLHADSSVSVSDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG CCCEEEEEEECCCEEEECCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCC LHGVGVSVVNALSDWLELRIWRDGKEHIARFEGGFTTKPLEVVSECGDRTGTEVRFMAST CCHHHHHHHHHHHHHHHEEHCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEECC ETFSNLDYVFKTLENRLRELAFLNSGVRIILRDERPAEALESDLFYEGGVREFVRYLDRS CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHH KTSAMEEPIFITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTRT HHHHHCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH INLYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL HEEEECCCCCCCHHCEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH VNEKLQEWFEEHPHEARVIVSKIVEAALAREAARKARELTRRKTAMDIASLPGKLADCQE HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCC KDPSKSELFLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLGSQEIGTLIT CCCCCCEEEEEECCCCCCCCHHCHHHCCCEEEECCCCEECHHHHHHHHHHCHHHHHHHHH ALGTGIGRDEFNIDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQP HHHCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECC PLYKVSRGKSEVYLKDETALEDYLVAQGVEGASLRLSSGEEIAGQDLARVVTGARNFKRI CCCHHCCCCCEEEECCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH LDAFPTHYPRRIVEQAALAGAFDAGKADADLQGVADDVAKRLDLVAVEYERGWNGRITQD HHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCC HGIRLSRVLRGVEEIRTLDGAVLRSGEARKLAEVSKDSRTVYQDPATLTRKDRVQLIHGP CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEECCCCHHCCCCCEEEEECH TELLKAILDEGAKGQQMQRYKGLGEMNPDQLWETTLDHEARTLLQVKIDDLADADDIFTK HHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEEEHHCCCHHHHHHH LMGDVVEPRREFIQNNALSVENLDF HHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226640 [H]