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The map label for this gene is ybeY [C]

Identifier: 88658303

GI number: 88658303

Start: 1174868

End: 1175332

Strand: Direct

Name: ybeY [C]

Synonym: ECH_1155

Alternate gene names: 88658303

Gene position: 1174868-1175332 (Clockwise)

Preceding gene: 88658034

Following gene: 88657765

Centisome position: 99.88

GC content: 24.52

Gene sequence:

>465_bases
ATGATTGAAATCAATATTTACTATAGGAAGTGGTATAATATAATAAATAAGCCAAAAAGTTTTATAAAAAAAATTATTAA
TACTTCTCTAATAGATTTAAATATTTATGAATACAAACCTACAATTTCTGTTGTGCTAGCAAACAATAGACTACTACAAA
AACTAAATTATGAATATAGGAAAAAAAATAAACCAACAAACGTACTATCATTCCCATACAATAAATTAAATAAGTATTGT
TATTTAGGAGAAATTTTTGTTTCATTAGACACTCTTATAAACGAATCTACTGATTTAAATATACCAATAGAACATCATAC
ATCTCATATGCTCATTCATGGACTATTACATATCTTAGACTATAACCATGAAGAACCATTAGAGCAATACATTATGGAAT
CTATTGAAATTAAGTTACTAGATAAACTAGGCATAAAAAATCCTTATGTTCCACGTGAAACATAA

Upstream 100 bases:

>100_bases
CATTAAAAACTATGTTAATTCTAAAACAACCACGTCTTTCAGTTTCTCAAGTAACAGAACAAGAATGGAATTGTATTTTA
CATTTAGGTGAGACTATCTT

Downstream 100 bases:

>100_bases
GCACTAAAATTTGTATTTATCATCAATTCACAATCAAAATTCGTATTATATTTTCATTAATAGTACTTAAGAATAAAAAA
TTCAGTGACACCATTCTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MIEINIYYRKWYNIINKPKSFIKKIINTSLIDLNIYEYKPTISVVLANNRLLQKLNYEYRKKNKPTNVLSFPYNKLNKYC
YLGEIFVSLDTLINESTDLNIPIEHHTSHMLIHGLLHILDYNHEEPLEQYIMESIEIKLLDKLGIKNPYVPRET

Sequences:

>Translated_154_residues
MIEINIYYRKWYNIINKPKSFIKKIINTSLIDLNIYEYKPTISVVLANNRLLQKLNYEYRKKNKPTNVLSFPYNKLNKYC
YLGEIFVSLDTLINESTDLNIPIEHHTSHMLIHGLLHILDYNHEEPLEQYIMESIEIKLLDKLGIKNPYVPRET
>Mature_154_residues
MIEINIYYRKWYNIINKPKSFIKKIINTSLIDLNIYEYKPTISVVLANNRLLQKLNYEYRKKNKPTNVLSFPYNKLNKYC
YLGEIFVSLDTLINESTDLNIPIEHHTSHMLIHGLLHILDYNHEEPLEQYIMESIEIKLLDKLGIKNPYVPRET

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=117, Percent_Identity=32.4786324786325, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_EHRCR (Q2GF44)

Other databases:

- EMBL:   CP000236
- RefSeq:   YP_507939.1
- ProteinModelPortal:   Q2GF44
- SMR:   Q2GF44
- STRING:   Q2GF44
- GeneID:   3928001
- GenomeReviews:   CP000236_GR
- KEGG:   ech:ECH_1155
- TIGR:   ECH_1155
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   DIIIARE
- PhylomeDB:   Q2GF44
- ProtClustDB:   CLSK749536
- BioCyc:   ECHA205920:ECH_1155-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18400; Mature: 18400

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEINIYYRKWYNIINKPKSFIKKIINTSLIDLNIYEYKPTISVVLANNRLLQKLNYEYR
CEEEEEEHHHHHHHHCCHHHHHHHHHCCCEEEEEEEEECCEEEEEEECCHHHHHHCHHHH
KKNKPTNVLSFPYNKLNKYCYLGEIFVSLDTLINESTDLNIPIEHHTSHMLIHGLLHILD
HCCCCCCEEECCHHHHCCEEHHHHHHHHHHHHHCCCCCCCCCHHHCHHHHHHHHHHHHHC
YNHEEPLEQYIMESIEIKLLDKLGIKNPYVPRET
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MIEINIYYRKWYNIINKPKSFIKKIINTSLIDLNIYEYKPTISVVLANNRLLQKLNYEYR
CEEEEEEHHHHHHHHCCHHHHHHHHHCCCEEEEEEEEECCEEEEEEECCHHHHHHCHHHH
KKNKPTNVLSFPYNKLNKYCYLGEIFVSLDTLINESTDLNIPIEHHTSHMLIHGLLHILD
HCCCCCCEEECCHHHHCCEEHHHHHHHHHHHHHCCCCCCCCCHHHCHHHHHHHHHHHHHC
YNHEEPLEQYIMESIEIKLLDKLGIKNPYVPRET
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA