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The map label for this gene is secD [H]

Identifier: 88658259

GI number: 88658259

Start: 1129319

End: 1130836

Strand: Reverse

Name: secD [H]

Synonym: ECH_1106

Alternate gene names: 88658259

Gene position: 1130836-1129319 (Counterclockwise)

Preceding gene: 88657730

Following gene: 88658255

Centisome position: 96.14

GC content: 29.71

Gene sequence:

>1518_bases
ATGTTTTCTAAGTTACAAATTAAGCCTATAGTTGTGACCTTGTTATGTGTTCTTGCTATATATTTAATACTACCAAATTT
TATTAATAGTAAATTTTTGCTGTCAAAACAAAAAGTTAATCTAGGATTAGATCTGCAAGGTGGTGTTTACTTGTTGTTAG
AAGCGGATTTTAAAGAATATTTAAAAGAAAGAATGTATAGCTTGTATGATGAAATGAGTGAATTTTTATCCAGCAAAAAA
ATAGAGTATAGTAAACTAGATGTAGAGCAGGATAAACTGGTGTTGGTACTAAAAAGTAGTCAGGATTTTAATAAAATAAA
GTTGTTTGATAATAAAAACGTTAGAGTATTTGAACAGGAAGGTCAGATTGTCATGTCTTTTTATGACAGTTATAAGGCAA
GTTTGTTGAGGAATGTTATATCTGATTCTATTAGTAACATAAGACGTAGGTTAGATAAATCTGGTACAAAAGAGATTATT
ATAAATAGTCATGGTAAAGATAGAATCTCTCTGCAAATTCCTGGGGTACATGATACTAGTCAAATCAAGACGTTATTGGG
CAAGACAGCAAAGCTGACATTTCACTTGCTAGAAAATGTTAGTCAGTTATCATCTATTAATCCTCTTACTACTGTTTTGC
TTAAGGATCATCGTGGAAATACATATCCTATATTAAAAAAAGTTGAAATTAGTGGTGATTCTTTAATAGATGTGTCATCT
GGTATAAATAATCTTGGTAACGTAGTTGTACATTTTAAGCTGAATAATGCAGCAGCTAAAAAGTTTGCTAAAATTACAAA
AGAAAACTTTAATAAACCATTTGCTATAGTGCTGGATGGAGTAGTACTTACTGCTCCTATAATACGTGAACCTATTTTAA
CTGGAAGTGGTGAAATTAGTGGTAATTTTACGGTTGAAACTGCAAAAGAATTATCTATATTGTTAAAATCTGGAGCTTTG
CCAGTACCTTTGAAAGTAATAGAAGAAAAAACAATAGGTTCTAGTCTAGGTGCTGAATACATTAAGCAAGGTAGATTAGC
AATGATAATATCAATTGTAGCAGTTTCTATTTTTATTATATTTTCTTATCGTATATTTGGTGTTTTAGCTGTAATTGGAT
TAGTTTTTAATATTGTTTTTATTATTACCATACTTACATTGCTTCAAGCTACGCTTACATTACCTGGACTTGCAGGAATT
ACTTTGACAGTTGGAATGTCTGTGGATGCTAATGTGTTGATTTTTGAGCGTATTAAAGAAGAGTTAAAGTCTACAAAAAA
GTTAAAATGGGCTGTAGAATCTGGCTTTAAAAATGCTATGTCAACGATATTTGATTCTAATGTTACCACATTAATTGTTG
CTGCAATTATGTTTGTAATAGGTAGTGGCCCTATTAGTGGATTTGCTATTACATTATCAATAGGTATTTTATGTTCCATG
TTTTCTGCAATAACTTTAACAAAGATGCTAATAGATTTATATATTAGATTATTTAATTTGAAGACATTAAGTATATGA

Upstream 100 bases:

>100_bases
ATGTTGTGCTGTATTAGATTAGTGATTTGTCTTAGAAATATAAAATATTTTGTTTGTTGCAATAATATAATATAATAGCC
AGATATATTTGGTAGATGAT

Downstream 100 bases:

>100_bases
TTTGTGAAATTTTGAAAAGTTGATTTATGTCTGGTAGTGATGAGAAAGATAAAGTGAAAATAGTTTGTTGCAGTGGGGAA
GGGAATGCTTCTGAGTATAT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 505; Mature: 505

Protein sequence:

>505_residues
MFSKLQIKPIVVTLLCVLAIYLILPNFINSKFLLSKQKVNLGLDLQGGVYLLLEADFKEYLKERMYSLYDEMSEFLSSKK
IEYSKLDVEQDKLVLVLKSSQDFNKIKLFDNKNVRVFEQEGQIVMSFYDSYKASLLRNVISDSISNIRRRLDKSGTKEII
INSHGKDRISLQIPGVHDTSQIKTLLGKTAKLTFHLLENVSQLSSINPLTTVLLKDHRGNTYPILKKVEISGDSLIDVSS
GINNLGNVVVHFKLNNAAAKKFAKITKENFNKPFAIVLDGVVLTAPIIREPILTGSGEISGNFTVETAKELSILLKSGAL
PVPLKVIEEKTIGSSLGAEYIKQGRLAMIISIVAVSIFIIFSYRIFGVLAVIGLVFNIVFIITILTLLQATLTLPGLAGI
TLTVGMSVDANVLIFERIKEELKSTKKLKWAVESGFKNAMSTIFDSNVTTLIVAAIMFVIGSGPISGFAITLSIGILCSM
FSAITLTKMLIDLYIRLFNLKTLSI

Sequences:

>Translated_505_residues
MFSKLQIKPIVVTLLCVLAIYLILPNFINSKFLLSKQKVNLGLDLQGGVYLLLEADFKEYLKERMYSLYDEMSEFLSSKK
IEYSKLDVEQDKLVLVLKSSQDFNKIKLFDNKNVRVFEQEGQIVMSFYDSYKASLLRNVISDSISNIRRRLDKSGTKEII
INSHGKDRISLQIPGVHDTSQIKTLLGKTAKLTFHLLENVSQLSSINPLTTVLLKDHRGNTYPILKKVEISGDSLIDVSS
GINNLGNVVVHFKLNNAAAKKFAKITKENFNKPFAIVLDGVVLTAPIIREPILTGSGEISGNFTVETAKELSILLKSGAL
PVPLKVIEEKTIGSSLGAEYIKQGRLAMIISIVAVSIFIIFSYRIFGVLAVIGLVFNIVFIITILTLLQATLTLPGLAGI
TLTVGMSVDANVLIFERIKEELKSTKKLKWAVESGFKNAMSTIFDSNVTTLIVAAIMFVIGSGPISGFAITLSIGILCSM
FSAITLTKMLIDLYIRLFNLKTLSI
>Mature_505_residues
MFSKLQIKPIVVTLLCVLAIYLILPNFINSKFLLSKQKVNLGLDLQGGVYLLLEADFKEYLKERMYSLYDEMSEFLSSKK
IEYSKLDVEQDKLVLVLKSSQDFNKIKLFDNKNVRVFEQEGQIVMSFYDSYKASLLRNVISDSISNIRRRLDKSGTKEII
INSHGKDRISLQIPGVHDTSQIKTLLGKTAKLTFHLLENVSQLSSINPLTTVLLKDHRGNTYPILKKVEISGDSLIDVSS
GINNLGNVVVHFKLNNAAAKKFAKITKENFNKPFAIVLDGVVLTAPIIREPILTGSGEISGNFTVETAKELSILLKSGAL
PVPLKVIEEKTIGSSLGAEYIKQGRLAMIISIVAVSIFIIFSYRIFGVLAVIGLVFNIVFIITILTLLQATLTLPGLAGI
TLTVGMSVDANVLIFERIKEELKSTKKLKWAVESGFKNAMSTIFDSNVTTLIVAAIMFVIGSGPISGFAITLSIGILCSM
FSAITLTKMLIDLYIRLFNLKTLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=505, Percent_Identity=33.0693069306931, Blast_Score=260, Evalue=2e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 55829; Mature: 55829

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSKLQIKPIVVTLLCVLAIYLILPNFINSKFLLSKQKVNLGLDLQGGVYLLLEADFKEY
CCCCEECHHHHHHHHHHHHHHHHHHHHCCCHHEEEHHCCCCCEEECCCEEEEEECHHHHH
LKERMYSLYDEMSEFLSSKKIEYSKLDVEQDKLVLVLKSSQDFNKIKLFDNKNVRVFEQE
HHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEECC
GQIVMSFYDSYKASLLRNVISDSISNIRRRLDKSGTKEIIINSHGKDRISLQIPGVHDTS
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCHH
QIKTLLGKTAKLTFHLLENVSQLSSINPLTTVLLKDHRGNTYPILKKVEISGDSLIDVSS
HHHHHHCCHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCCCCCEEEEEEECCCCEEEHHH
GINNLGNVVVHFKLNNAAAKKFAKITKENFNKPFAIVLDGVVLTAPIIREPILTGSGEIS
CCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCC
GNFTVETAKELSILLKSGALPVPLKVIEEKTIGSSLGAEYIKQGRLAMIISIVAVSIFII
CCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHCCHHHHHCCCHHHHHHHHHHHHHHH
FSYRIFGVLAVIGLVFNIVFIITILTLLQATLTLPGLAGITLTVGMSVDANVLIFERIKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHH
ELKSTKKLKWAVESGFKNAMSTIFDSNVTTLIVAAIMFVIGSGPISGFAITLSIGILCSM
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
FSAITLTKMLIDLYIRLFNLKTLSI
HHHHHHHHHHHHHHHHHHCCEEECC
>Mature Secondary Structure
MFSKLQIKPIVVTLLCVLAIYLILPNFINSKFLLSKQKVNLGLDLQGGVYLLLEADFKEY
CCCCEECHHHHHHHHHHHHHHHHHHHHCCCHHEEEHHCCCCCEEECCCEEEEEECHHHHH
LKERMYSLYDEMSEFLSSKKIEYSKLDVEQDKLVLVLKSSQDFNKIKLFDNKNVRVFEQE
HHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEECC
GQIVMSFYDSYKASLLRNVISDSISNIRRRLDKSGTKEIIINSHGKDRISLQIPGVHDTS
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCHH
QIKTLLGKTAKLTFHLLENVSQLSSINPLTTVLLKDHRGNTYPILKKVEISGDSLIDVSS
HHHHHHCCHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCCCCCEEEEEEECCCCEEEHHH
GINNLGNVVVHFKLNNAAAKKFAKITKENFNKPFAIVLDGVVLTAPIIREPILTGSGEIS
CCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCC
GNFTVETAKELSILLKSGALPVPLKVIEEKTIGSSLGAEYIKQGRLAMIISIVAVSIFII
CCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHCCHHHHHCCCHHHHHHHHHHHHHHH
FSYRIFGVLAVIGLVFNIVFIITILTLLQATLTLPGLAGITLTVGMSVDANVLIFERIKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHH
ELKSTKKLKWAVESGFKNAMSTIFDSNVTTLIVAAIMFVIGSGPISGFAITLSIGILCSM
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
FSAITLTKMLIDLYIRLFNLKTLSI
HHHHHHHHHHHHHHHHHHCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA