| Definition | Ehrlichia chaffeensis str. Arkansas, complete genome. |
|---|---|
| Accession | NC_007799 |
| Length | 1,176,248 |
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The map label for this gene is virB6
Identifier: 88658009
GI number: 88658009
Start: 483786
End: 486266
Strand: Direct
Name: virB6
Synonym: ECH_0496
Alternate gene names: NA
Gene position: 483786-486266 (Clockwise)
Preceding gene: 88657911
Following gene: 88658206
Centisome position: 41.13
GC content: 33.78
Gene sequence:
>2481_bases ATGCTAAAAGTTAGTAAGAGTATAATATATGTATTAATGTTATTTTTGATTAATGTTAATTTTATATGTGCTAAATCTAC GTTAGCAGCAGAAGTTGAAAGTGAAAAAGTAGCTGTATATAGAACTACAATTGCTAGTAATCCTTTATATGCTAAAGTAA GTGAACATGCTAAGTATATAGGTATTGCTGGATTTACTGCTGGATTTGCTCTTATTATTGGTAGTATATTCTTTCTCAAC CCTGCAACTTGGTATGTAGCATTAGGGATGTTTCTTGCAGGTATGGCAGCTATTGCTTTTGCTGCTGCTAAAGCTGCTCC ATTTTTTGCTTGTAATTGGTCTTTTGTGCGTCATCCGATTATGCGTTTCGATACTCATGATGCAAAAAGAAATGGTAATA CTGAAGGTAGTTATAAAGAATGTGAAGAGCCTACTAAGAATTATCCAGATTGTACGAATCGTGATTTTGGTTCAGAGGAG GAATATTTTAGGTGTCTTGTAACTGGTGATAAAGATAGTACTAAACCTGTTAGTATAAACAATGCTAAACAAAATGAACC TGTATGTGCATCTCAAAAGTTTAAAAAAGTAGATAAATATTATTGGCCTAAAAATAGAATATCTAGCTCTAATTATATAG AAGTGTGTTATCGTAATCCCATAGGTAGCCTTAATCCTATCACTATGATTAAAAGAGCATCAGAAGCTTCATCGGGTAAT GTTACTGAATTATTGAAAAAAGGAGAATATCCAAGGGAAGGTGATTACTCTACTCAGGAAATAAAAGTTGCTAAATATGC TATGCAGGGAGAAGTAAAATGTGAGGTTTTACAAGCTGGTCAAGAAAAAGTGATACATACGATTACTTTTCAGGCTGTAG AAAAAGCAGATAAGTTATGTGTTTATGCTACTAAATCTATAGGAATTCCTTTGTGGCCTCAAGTTGAGATTGGTTGTCAT ATGCGCCCCAGTGGACCTCCAGTTCCAATGTGTGAGAAGTCTACACCAGTTATGTCAGATGATAATAAGAGGATTGTAAG TTATGATAATTCTAAATGTTATAGTTGTTATATAGATCCTGCATGTAGAGGTGAAGTTGGACCTCATATAAAATCTGTAT TCCCAATGACTTCAATAATAGTTTCTTGTATAAAAGGGTCCTTGAGCAATATATTAACTGGTCAATGTGGTCAAAATGCT AGCAAAAAAGTTGGTTTTTTGAAAGTTGCTCAAGATAAGTTAAAAAAGGCAGTAATGGCAGTTTTAGTATTGGCCTTAAT ATTATTTGCAATAAAAGCAGCATTGGGTGGGATACAAAGTCCAGCTGAATTGTATATGTTAATAATTAAATTTGCATTGG TAGTCTACTTTACTCAGGGATCTGCTATGTCACATTATTATGATCAAATAGTAAAGTTATCCATAGGATTATCAGATATG GTATTGCAAGCAGGTGGATCACAAACTATATGTGATTATAGTCAGAGTGATTACGAAGATAAATATAAATATATAGCTCC ATGGGATAGGTTAGATTGTAGAGTATTGTTTTACTTAGGACAACAAGTAAATGGTGGAGCCGCAACAATTGTTTTAGGGG TACTTTTGTCAGCGGGTCTTTTCTTTGCTACTATGCTGTTTAATATGAAATTGATGTTATGTTTGATTGCAATTTTTGCA GTAATAATGCTTTTACTAATTATGATATGGTTAGTTTATATATTTTTATTATCGCTTATTGCACTGACTATTTTGATATT AATTTCTCCATTAATGATTCCTATGGTGTTATTTCAAGCTACAAAGGGATTTTTTGATGGCTGGATAAGACAGTTAATGG TTTATACATTATATCCTGTAATACTTTTTGCCTTTCTAGCATTATTATTTACTGTTTTTGATAATTTATATTTTGAGGAT CTTAAATTTAAGAGAAAGGAAGTTAATGTTTTAGGTCAGAAAAGAATTACTTTCACGTTGAATGATCCAAGAGAGTGTGA TGATCCAAAATATGATAATAATTTAGCTTGTATGTTTGGAAATATAGAATTTATTACAAAGCCTGCATTTTTTGGATTTA ATGCCTATGCTCCTGATTTTAAACATGGAGCTGAGATGTTATGGATGAAATTGCTCATGATGGTATTGATAGGCTTTTTA TTTTATCATTTCTTATCTTCTATTGCTTATATAGCAGCTGAACTTGCAGGTGATCCAAGAGCTGGTCATGTTGGATCATC ATTTACTCCAAAGTCGATGTTGGCTTCTATTGTGGGTCTTGCAGCTAAAGTTCAGGGTAGTGTAGGAGAACAGGCAAAGA AAGCTATAACTGATAAGTTAGATGATCGTAAAAAATCTGCATCTGATGGGGGAGGAAAAGATGAGCTTTCTGGAGGAAGC TCTGAAGGAGCTGGTGATGCTGCAGAAGGTGCTGGAGGAGGTGCTGGAGGAAGTGGTGCTGCTAGTGGAGGAGGAGGATA A
Upstream 100 bases:
>100_bases AGTAGGAGATGATCCAAATGTTTGGTTGCCTATATTTTATGAAAGAGTAAAGCATGTGTAAATTTAATAATTAAGAATAT TCTTTATAAAAGAGTTGATT
Downstream 100 bases:
>100_bases AAATGTGAAGTTTCTAGTAAGTGCTGATAGAAGCTAGAAATACTCCTTATTCAATATGATATTATTTTTGATGTTTAGTT ATGGAGAAAGGGATTAAGTA
Product: type IV secretion system protein VirB6
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 826; Mature: 826
Protein sequence:
>826_residues MLKVSKSIIYVLMLFLINVNFICAKSTLAAEVESEKVAVYRTTIASNPLYAKVSEHAKYIGIAGFTAGFALIIGSIFFLN PATWYVALGMFLAGMAAIAFAAAKAAPFFACNWSFVRHPIMRFDTHDAKRNGNTEGSYKECEEPTKNYPDCTNRDFGSEE EYFRCLVTGDKDSTKPVSINNAKQNEPVCASQKFKKVDKYYWPKNRISSSNYIEVCYRNPIGSLNPITMIKRASEASSGN VTELLKKGEYPREGDYSTQEIKVAKYAMQGEVKCEVLQAGQEKVIHTITFQAVEKADKLCVYATKSIGIPLWPQVEIGCH MRPSGPPVPMCEKSTPVMSDDNKRIVSYDNSKCYSCYIDPACRGEVGPHIKSVFPMTSIIVSCIKGSLSNILTGQCGQNA SKKVGFLKVAQDKLKKAVMAVLVLALILFAIKAALGGIQSPAELYMLIIKFALVVYFTQGSAMSHYYDQIVKLSIGLSDM VLQAGGSQTICDYSQSDYEDKYKYIAPWDRLDCRVLFYLGQQVNGGAATIVLGVLLSAGLFFATMLFNMKLMLCLIAIFA VIMLLLIMIWLVYIFLLSLIALTILILISPLMIPMVLFQATKGFFDGWIRQLMVYTLYPVILFAFLALLFTVFDNLYFED LKFKRKEVNVLGQKRITFTLNDPRECDDPKYDNNLACMFGNIEFITKPAFFGFNAYAPDFKHGAEMLWMKLLMMVLIGFL FYHFLSSIAYIAAELAGDPRAGHVGSSFTPKSMLASIVGLAAKVQGSVGEQAKKAITDKLDDRKKSASDGGGKDELSGGS SEGAGDAAEGAGGGAGGSGAASGGGG
Sequences:
>Translated_826_residues MLKVSKSIIYVLMLFLINVNFICAKSTLAAEVESEKVAVYRTTIASNPLYAKVSEHAKYIGIAGFTAGFALIIGSIFFLN PATWYVALGMFLAGMAAIAFAAAKAAPFFACNWSFVRHPIMRFDTHDAKRNGNTEGSYKECEEPTKNYPDCTNRDFGSEE EYFRCLVTGDKDSTKPVSINNAKQNEPVCASQKFKKVDKYYWPKNRISSSNYIEVCYRNPIGSLNPITMIKRASEASSGN VTELLKKGEYPREGDYSTQEIKVAKYAMQGEVKCEVLQAGQEKVIHTITFQAVEKADKLCVYATKSIGIPLWPQVEIGCH MRPSGPPVPMCEKSTPVMSDDNKRIVSYDNSKCYSCYIDPACRGEVGPHIKSVFPMTSIIVSCIKGSLSNILTGQCGQNA SKKVGFLKVAQDKLKKAVMAVLVLALILFAIKAALGGIQSPAELYMLIIKFALVVYFTQGSAMSHYYDQIVKLSIGLSDM VLQAGGSQTICDYSQSDYEDKYKYIAPWDRLDCRVLFYLGQQVNGGAATIVLGVLLSAGLFFATMLFNMKLMLCLIAIFA VIMLLLIMIWLVYIFLLSLIALTILILISPLMIPMVLFQATKGFFDGWIRQLMVYTLYPVILFAFLALLFTVFDNLYFED LKFKRKEVNVLGQKRITFTLNDPRECDDPKYDNNLACMFGNIEFITKPAFFGFNAYAPDFKHGAEMLWMKLLMMVLIGFL FYHFLSSIAYIAAELAGDPRAGHVGSSFTPKSMLASIVGLAAKVQGSVGEQAKKAITDKLDDRKKSASDGGGKDELSGGS SEGAGDAAEGAGGGAGGSGAASGGGG >Mature_826_residues MLKVSKSIIYVLMLFLINVNFICAKSTLAAEVESEKVAVYRTTIASNPLYAKVSEHAKYIGIAGFTAGFALIIGSIFFLN PATWYVALGMFLAGMAAIAFAAAKAAPFFACNWSFVRHPIMRFDTHDAKRNGNTEGSYKECEEPTKNYPDCTNRDFGSEE EYFRCLVTGDKDSTKPVSINNAKQNEPVCASQKFKKVDKYYWPKNRISSSNYIEVCYRNPIGSLNPITMIKRASEASSGN VTELLKKGEYPREGDYSTQEIKVAKYAMQGEVKCEVLQAGQEKVIHTITFQAVEKADKLCVYATKSIGIPLWPQVEIGCH MRPSGPPVPMCEKSTPVMSDDNKRIVSYDNSKCYSCYIDPACRGEVGPHIKSVFPMTSIIVSCIKGSLSNILTGQCGQNA SKKVGFLKVAQDKLKKAVMAVLVLALILFAIKAALGGIQSPAELYMLIIKFALVVYFTQGSAMSHYYDQIVKLSIGLSDM VLQAGGSQTICDYSQSDYEDKYKYIAPWDRLDCRVLFYLGQQVNGGAATIVLGVLLSAGLFFATMLFNMKLMLCLIAIFA VIMLLLIMIWLVYIFLLSLIALTILILISPLMIPMVLFQATKGFFDGWIRQLMVYTLYPVILFAFLALLFTVFDNLYFED LKFKRKEVNVLGQKRITFTLNDPRECDDPKYDNNLACMFGNIEFITKPAFFGFNAYAPDFKHGAEMLWMKLLMMVLIGFL FYHFLSSIAYIAAELAGDPRAGHVGSSFTPKSMLASIVGLAAKVQGSVGEQAKKAITDKLDDRKKSASDGGGKDELSGGS SEGAGDAAEGAGGGAGGSGAASGGGG
Specific function: Unknown
COG id: COG3704
COG function: function code U; Type IV secretory pathway, VirB6 components
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbL/virB6 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007688 [H]
Pfam domain/function: PF04610 TrbL [H]
EC number: NA
Molecular weight: Translated: 90558; Mature: 90558
Theoretical pI: Translated: 8.37; Mature: 8.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKVSKSIIYVLMLFLINVNFICAKSTLAAEVESEKVAVYRTTIASNPLYAKVSEHAKYI CCCCHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCEEEEEEECCCCCCEEEHHHCCCEE GIAGFTAGFALIIGSIFFLNPATWYVALGMFLAGMAAIAFAAAKAAPFFACNWSFVRHPI EEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHCHH MRFDTHDAKRNGNTEGSYKECEEPTKNYPDCTNRDFGSEEEYFRCLVTGDKDSTKPVSIN HHCCCCHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHEEEEEECCCCCCCCEEEC NAKQNEPVCASQKFKKVDKYYWPKNRISSSNYIEVCYRNPIGSLNPITMIKRASEASSGN CCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCC VTELLKKGEYPREGDYSTQEIKVAKYAMQGEVKCEVLQAGQEKVIHTITFQAVEKADKLC HHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCEE VYATKSIGIPLWPQVEIGCHMRPSGPPVPMCEKSTPVMSDDNKRIVSYDNSKCYSCYIDP EEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECC ACRGEVGPHIKSVFPMTSIIVSCIKGSLSNILTGQCGQNASKKVGFLKVAQDKLKKAVMA HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH VLVLALILFAIKAALGGIQSPAELYMLIIKFALVVYFTQGSAMSHYYDQIVKLSIGLSDM HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHH VLQAGGSQTICDYSQSDYEDKYKYIAPWDRLDCRVLFYLGQQVNGGAATIVLGVLLSAGL HHHCCCCCCEECCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH FFATMLFNMKLMLCLIAIFAVIMLLLIMIWLVYIFLLSLIALTILILISPLMIPMVLFQA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TKGFFDGWIRQLMVYTLYPVILFAFLALLFTVFDNLYFEDLKFKRKEVNVLGQKRITFTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE NDPRECDDPKYDNNLACMFGNIEFITKPAFFGFNAYAPDFKHGAEMLWMKLLMMVLIGFL CCCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH FYHFLSSIAYIAAELAGDPRAGHVGSSFTPKSMLASIVGLAAKVQGSVGEQAKKAITDKL HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH DDRKKSASDGGGKDELSGGSSEGAGDAAEGAGGGAGGSGAASGGGG HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLKVSKSIIYVLMLFLINVNFICAKSTLAAEVESEKVAVYRTTIASNPLYAKVSEHAKYI CCCCHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCEEEEEEECCCCCCEEEHHHCCCEE GIAGFTAGFALIIGSIFFLNPATWYVALGMFLAGMAAIAFAAAKAAPFFACNWSFVRHPI EEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHCHH MRFDTHDAKRNGNTEGSYKECEEPTKNYPDCTNRDFGSEEEYFRCLVTGDKDSTKPVSIN HHCCCCHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHEEEEEECCCCCCCCEEEC NAKQNEPVCASQKFKKVDKYYWPKNRISSSNYIEVCYRNPIGSLNPITMIKRASEASSGN CCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCC VTELLKKGEYPREGDYSTQEIKVAKYAMQGEVKCEVLQAGQEKVIHTITFQAVEKADKLC HHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCEE VYATKSIGIPLWPQVEIGCHMRPSGPPVPMCEKSTPVMSDDNKRIVSYDNSKCYSCYIDP EEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECC ACRGEVGPHIKSVFPMTSIIVSCIKGSLSNILTGQCGQNASKKVGFLKVAQDKLKKAVMA HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH VLVLALILFAIKAALGGIQSPAELYMLIIKFALVVYFTQGSAMSHYYDQIVKLSIGLSDM HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHH VLQAGGSQTICDYSQSDYEDKYKYIAPWDRLDCRVLFYLGQQVNGGAATIVLGVLLSAGL HHHCCCCCCEECCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH FFATMLFNMKLMLCLIAIFAVIMLLLIMIWLVYIFLLSLIALTILILISPLMIPMVLFQA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TKGFFDGWIRQLMVYTLYPVILFAFLALLFTVFDNLYFEDLKFKRKEVNVLGQKRITFTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE NDPRECDDPKYDNNLACMFGNIEFITKPAFFGFNAYAPDFKHGAEMLWMKLLMMVLIGFL CCCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH FYHFLSSIAYIAAELAGDPRAGHVGSSFTPKSMLASIVGLAAKVQGSVGEQAKKAITDKL HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH DDRKKSASDGGGKDELSGGSSEGAGDAAEGAGGGAGGSGAASGGGG HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA