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The map label for this gene is yrdA [H]

Identifier: 88657661

GI number: 88657661

Start: 1094284

End: 1094796

Strand: Reverse

Name: yrdA [H]

Synonym: ECH_1066

Alternate gene names: 88657661

Gene position: 1094796-1094284 (Counterclockwise)

Preceding gene: 88657827

Following gene: 88658260

Centisome position: 93.08

GC content: 33.33

Gene sequence:

>513_bases
ATGCATAATGTAATCAGTTACAAGAATTTTTTTCCTAACATAGATAGTACTGTGTTTGTTGCACCTACTGCTTTTGTTAT
AGGCAATGTTTATATTAGTAAGGATGCAAGTGTATGGTATAACTCAGTGTTGCGTGGAGATGTAGGAATGATTAGTGTAG
GTGAAGGTACTAATATTCAAGATAATACTGTGATACATGTTGATAGAAATTATGGTGATACACAAATTGGGAAAATGGTG
ACAGTTGGGCATAGTTGTATATTACATGCTTGTCAAATACATGATTATGCATTTGTTGGTATGGGTTCTGTTGTTATGGA
TAAAGTAATTATGGAAGAGAATACAATGCTAGCATCTGGCTCTTTAGTAACTAAAGGTAAAATAATCAAGTCTGGAGAGT
TGTGGGCTGGTAGGCCAGCAAAATTTTTTAGGATGCTTTCTGAAGAAGAAATAAATCACATTAAGGAATCTGCTAGTAAT
TATATACAGTTATCTCGTGACTATTTAAGATGA

Upstream 100 bases:

>100_bases
TTGCATGTAAATGTTATGTAAATTCTGGCCTTATAGCATTGTATAAGATATGTTATCATACAAACATTAGATATAGGTTT
GTGGGTAAGTGAGTGATTTT

Downstream 100 bases:

>100_bases
TAAACTACAGCAAATTGTTAGGAGAAGATTTATGCTGATTACTATTTTTGTGTAAAAGTTGTTTATTGAATTTCAATAAC
GCTTTATTATTGAGTTAAAT

Product: hexapeptide transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MHNVISYKNFFPNIDSTVFVAPTAFVIGNVYISKDASVWYNSVLRGDVGMISVGEGTNIQDNTVIHVDRNYGDTQIGKMV
TVGHSCILHACQIHDYAFVGMGSVVMDKVIMEENTMLASGSLVTKGKIIKSGELWAGRPAKFFRMLSEEEINHIKESASN
YIQLSRDYLR

Sequences:

>Translated_170_residues
MHNVISYKNFFPNIDSTVFVAPTAFVIGNVYISKDASVWYNSVLRGDVGMISVGEGTNIQDNTVIHVDRNYGDTQIGKMV
TVGHSCILHACQIHDYAFVGMGSVVMDKVIMEENTMLASGSLVTKGKIIKSGELWAGRPAKFFRMLSEEEINHIKESASN
YIQLSRDYLR
>Mature_170_residues
MHNVISYKNFFPNIDSTVFVAPTAFVIGNVYISKDASVWYNSVLRGDVGMISVGEGTNIQDNTVIHVDRNYGDTQIGKMV
TVGHSCILHACQIHDYAFVGMGSVVMDKVIMEENTMLASGSLVTKGKIIKSGELWAGRPAKFFRMLSEEEINHIKESASN
YIQLSRDYLR

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=170, Percent_Identity=38.8235294117647, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI1787667, Length=150, Percent_Identity=40.6666666666667, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI87081681, Length=161, Percent_Identity=33.5403726708075, Blast_Score=94, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18914; Mature: 18914

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNVISYKNFFPNIDSTVFVAPTAFVIGNVYISKDASVWYNSVLRGDVGMISVGEGTNIQ
CCCCCCCHHCCCCCCCEEEECCHHHEEEEEEEECCCHHHHHHHHCCCCCEEEECCCCCCC
DNTVIHVDRNYGDTQIGKMVTVGHSCILHACQIHDYAFVGMGSVVMDKVIMEENTMLASG
CCEEEEEECCCCCCHHHHEEEECHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCEEECC
SLVTKGKIIKSGELWAGRPAKFFRMLSEEEINHIKESASNYIQLSRDYLR
CEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHCC
>Mature Secondary Structure
MHNVISYKNFFPNIDSTVFVAPTAFVIGNVYISKDASVWYNSVLRGDVGMISVGEGTNIQ
CCCCCCCHHCCCCCCCEEEECCHHHEEEEEEEECCCHHHHHHHHCCCCCEEEECCCCCCC
DNTVIHVDRNYGDTQIGKMVTVGHSCILHACQIHDYAFVGMGSVVMDKVIMEENTMLASG
CCEEEEEECCCCCCHHHHEEEECHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCEEECC
SLVTKGKIIKSGELWAGRPAKFFRMLSEEEINHIKESASNYIQLSRDYLR
CEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]