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The map label for this gene is secD

Identifier: 88608870

GI number: 88608870

Start: 548627

End: 550135

Strand: Direct

Name: secD

Synonym: NSE_0627

Alternate gene names: 88608870

Gene position: 548627-550135 (Clockwise)

Preceding gene: 88608753

Following gene: 88608808

Centisome position: 63.87

GC content: 39.7

Gene sequence:

>1509_bases
ATGCGTTCGTTGCGCGTAAAGTGTTTTTTTCTGTTGTTTCTTTTTCTGGTTTCTGCCTTCGTTGTTTGGGGTAATTTTTC
TTCTGGATCAAATAAGAAAATTAATCCTGGATTAGATTTGCGCGGGGGTGTAAGCATTATAATGTCTATAAATCGCACCG
GGTACATTCAAGAAAAACTGCGCAGACTTGTTTCTGAAATCCTAGAATTTGCAAAAGAGAAAGGTATTAAAATAAAAAAA
ATTGGGATTGATGAGTCAAACCAAATAATTTCAATCTCACTTGAACAGTCGGAAGAAAACAATATTGCGGTTATAAGGGA
TTTTTTTAAAACTTCTGACGAAATAGTATTTGATAGCATCGATCAGAAACGTGCATATATGCAACTTTCGTACTCCGAGC
GCTACCTTAACGAAATAGATAAGAAATTGCTTGAAGATTCCATAAATAACCTTAGGAGACGAGTAGATGAGTTTGGTGTA
AGGGAAACATTGATTTATTCGCTCGGTGGGGACCGTATTGCAATAGAAGTCCCGGGTTTGCATGATCCAGAAGAGTTAGT
GACATTGCTTGGTAAAACAGCGAAACTGAGTTTCCATATGGTTGTAAATGATACTGCAACTATCCTGGGCAAATTCTTTT
TGAAAGATAAACTTGGCAGGAACCTACCCCTTGAAAGGACTCCCTCTCTTACTGGGGATCTCCTGGACGACGCTAGTGTT
GCATTTAGTCAAAGGGGTGTGCCAGTAGTGCGATTTAAATTCAATGCCTATGGCACAAAAAAACTAGAACAACTATCAAA
GGCTAATGTAGGGAGAGCTATGGCAATAGTACTGGATGATCTTATTTTGACTGCACCGGTGATTCGTGATCCAATAATTA
ATGGCCGGGGTGAAATATCCGGCAATTTCGATGTTAAGGAAGCAAAAGAACTTGCACTACTGCTCAAATCTGGTTCTTTA
CCTGCAGAACTTACGGTAATAGAACAGAGAGCCATTGGACCTTCACTAGGCGCAGAGGCAATACTTTTGGGGAAAAGAGC
TAGCCTCCTTGCAATGCTATTGGTAGTAACATTCATGTTATTTGGGTACGGTTGGTATGGCGTAGCTGCAACTATAGCAT
TAATAGTAAATCTGACACTACTGGTAGCAAGTTTGACATTACTCGAAGCGACACTCACTCTTCCAGGAATCGCTGGGTTG
ATACTAACAATAGGCATGGCAGTCGATGCAAACGTACTTATTTTTGAGCGTATGCGCGAAGAATTCAAAAGGACAGGTGT
CCTGAGAAATTCATTAATGAATGGCTTTGAACATGCAAAGGCAACAATTTTTGACGCGAATATTACCACAATACTTGCTG
CGCTTATGATGATTTTCATTGGTTCTGGTCCAATCAGAAGCTTTGCCGTTACACTTTCCCTCGGAATCATCACTTCAGTT
TTTTCATCAATTTTTGTGACAAGAGTATTGTTAGAAGTATTTGTGTTACCCAAGAAACCATCTAGGTAG

Upstream 100 bases:

>100_bases
TTTGGAAGGATATTAAGCAGGTAAGTAATGATGGCACATCCTAAATGGATTTCTCATATTATAATAACCAGGTTGTTATC
GCTTTTGTTGTATTAATCCA

Downstream 100 bases:

>100_bases
GATCTTGGCTGGCCATGTCATGGCGATTCTCTTGAGGTTATGACCACGGACTTCTTATGAGCTCGTTTGGTTTTCATCGG
TAACGGTCCACCTTTCCATA

Product: protein-export membrane protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MRSLRVKCFFLLFLFLVSAFVVWGNFSSGSNKKINPGLDLRGGVSIIMSINRTGYIQEKLRRLVSEILEFAKEKGIKIKK
IGIDESNQIISISLEQSEENNIAVIRDFFKTSDEIVFDSIDQKRAYMQLSYSERYLNEIDKKLLEDSINNLRRRVDEFGV
RETLIYSLGGDRIAIEVPGLHDPEELVTLLGKTAKLSFHMVVNDTATILGKFFLKDKLGRNLPLERTPSLTGDLLDDASV
AFSQRGVPVVRFKFNAYGTKKLEQLSKANVGRAMAIVLDDLILTAPVIRDPIINGRGEISGNFDVKEAKELALLLKSGSL
PAELTVIEQRAIGPSLGAEAILLGKRASLLAMLLVVTFMLFGYGWYGVAATIALIVNLTLLVASLTLLEATLTLPGIAGL
ILTIGMAVDANVLIFERMREEFKRTGVLRNSLMNGFEHAKATIFDANITTILAALMMIFIGSGPIRSFAVTLSLGIITSV
FSSIFVTRVLLEVFVLPKKPSR

Sequences:

>Translated_502_residues
MRSLRVKCFFLLFLFLVSAFVVWGNFSSGSNKKINPGLDLRGGVSIIMSINRTGYIQEKLRRLVSEILEFAKEKGIKIKK
IGIDESNQIISISLEQSEENNIAVIRDFFKTSDEIVFDSIDQKRAYMQLSYSERYLNEIDKKLLEDSINNLRRRVDEFGV
RETLIYSLGGDRIAIEVPGLHDPEELVTLLGKTAKLSFHMVVNDTATILGKFFLKDKLGRNLPLERTPSLTGDLLDDASV
AFSQRGVPVVRFKFNAYGTKKLEQLSKANVGRAMAIVLDDLILTAPVIRDPIINGRGEISGNFDVKEAKELALLLKSGSL
PAELTVIEQRAIGPSLGAEAILLGKRASLLAMLLVVTFMLFGYGWYGVAATIALIVNLTLLVASLTLLEATLTLPGIAGL
ILTIGMAVDANVLIFERMREEFKRTGVLRNSLMNGFEHAKATIFDANITTILAALMMIFIGSGPIRSFAVTLSLGIITSV
FSSIFVTRVLLEVFVLPKKPSR
>Mature_502_residues
MRSLRVKCFFLLFLFLVSAFVVWGNFSSGSNKKINPGLDLRGGVSIIMSINRTGYIQEKLRRLVSEILEFAKEKGIKIKK
IGIDESNQIISISLEQSEENNIAVIRDFFKTSDEIVFDSIDQKRAYMQLSYSERYLNEIDKKLLEDSINNLRRRVDEFGV
RETLIYSLGGDRIAIEVPGLHDPEELVTLLGKTAKLSFHMVVNDTATILGKFFLKDKLGRNLPLERTPSLTGDLLDDASV
AFSQRGVPVVRFKFNAYGTKKLEQLSKANVGRAMAIVLDDLILTAPVIRDPIINGRGEISGNFDVKEAKELALLLKSGSL
PAELTVIEQRAIGPSLGAEAILLGKRASLLAMLLVVTFMLFGYGWYGVAATIALIVNLTLLVASLTLLEATLTLPGIAGL
ILTIGMAVDANVLIFERMREEFKRTGVLRNSLMNGFEHAKATIFDANITTILAALMMIFIGSGPIRSFAVTLSLGIITSV
FSSIFVTRVLLEVFVLPKKPSR

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=523, Percent_Identity=32.3135755258126, Blast_Score=234, Evalue=9e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 55441; Mature: 55441

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLRVKCFFLLFLFLVSAFVVWGNFSSGSNKKINPGLDLRGGVSIIMSINRTGYIQEKL
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHH
RRLVSEILEFAKEKGIKIKKIGIDESNQIISISLEQSEENNIAVIRDFFKTSDEIVFDSI
HHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCHHHCCH
DQKRAYMQLSYSERYLNEIDKKLLEDSINNLRRRVDEFGVRETLIYSLGGDRIAIEVPGL
HHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCCEEEEECCCC
HDPEELVTLLGKTAKLSFHMVVNDTATILGKFFLKDKLGRNLPLERTPSLTGDLLDDASV
CCHHHHHHHHCCHHEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHH
AFSQRGVPVVRFKFNAYGTKKLEQLSKANVGRAMAIVLDDLILTAPVIRDPIINGRGEIS
HHHCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GNFDVKEAKELALLLKSGSLPAELTVIEQRAIGPSLGAEAILLGKRASLLAMLLVVTFML
CCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHH
FGYGWYGVAATIALIVNLTLLVASLTLLEATLTLPGIAGLILTIGMAVDANVLIFERMRE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHH
EFKRTGVLRNSLMNGFEHAKATIFDANITTILAALMMIFIGSGPIRSFAVTLSLGIITSV
HHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
FSSIFVTRVLLEVFVLPKKPSR
HHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRSLRVKCFFLLFLFLVSAFVVWGNFSSGSNKKINPGLDLRGGVSIIMSINRTGYIQEKL
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHH
RRLVSEILEFAKEKGIKIKKIGIDESNQIISISLEQSEENNIAVIRDFFKTSDEIVFDSI
HHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCHHHCCH
DQKRAYMQLSYSERYLNEIDKKLLEDSINNLRRRVDEFGVRETLIYSLGGDRIAIEVPGL
HHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCCEEEEECCCC
HDPEELVTLLGKTAKLSFHMVVNDTATILGKFFLKDKLGRNLPLERTPSLTGDLLDDASV
CCHHHHHHHHCCHHEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHH
AFSQRGVPVVRFKFNAYGTKKLEQLSKANVGRAMAIVLDDLILTAPVIRDPIINGRGEIS
HHHCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GNFDVKEAKELALLLKSGSLPAELTVIEQRAIGPSLGAEAILLGKRASLLAMLLVVTFML
CCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHH
FGYGWYGVAATIALIVNLTLLVASLTLLEATLTLPGIAGLILTIGMAVDANVLIFERMRE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHH
EFKRTGVLRNSLMNGFEHAKATIFDANITTILAALMMIFIGSGPIRSFAVTLSLGIITSV
HHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
FSSIFVTRVLLEVFVLPKKPSR
HHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA