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The map label for this gene is petC

Identifier: 88608753

GI number: 88608753

Start: 547800

End: 548570

Strand: Direct

Name: petC

Synonym: NSE_0626

Alternate gene names: 88608753

Gene position: 547800-548570 (Clockwise)

Preceding gene: 88608151

Following gene: 88608870

Centisome position: 63.77

GC content: 44.62

Gene sequence:

>771_bases
ATGAAAAAGTATTTTTTTATTGCTCTTTTGCTCTGCCAAGTTTCTGCACTTGCGAGTGAAGGAAGCTTTGAACCAAAAGA
GCTCGTTAAAATGTCTTGGTCGTTTGAGGGACCGCTCGGTACCTTTGATAAACAGGCCATAAAGCGTGGCCTGAAAGTCT
ATCAACAGGTTTGTGCGGCTTGCCATTCACTTAATAGAATATCGTTCCGCCATCTTCTAGGTGCCGGTTTTACGCCCGAA
GAAGCCAAGTTGATAGCATCGGAGTATCAGGTGAAGGATGGCCCTAATGATGATGGTGAATATTATGAACGCCCGGGCAT
GCTCTCAGACTATTTTGTTCCTCCTTATGCGAACAGAAAAGCAGCAGAAGCAGCAAACAATGCTGCGTATCCGCCGGATT
TATCTCTAATTGCGCGAGGTAGAATTGGTGGAGCGAATTATTTGTATTCTCTTTTGATTGGATTTACAGACGATGAAGCG
CCTGAAGGTTTATACAGTAATCCGTACTTTTCCACCGGTAAAATTGCCATGGCGCCGCCTCTGTCTGAAGATATCGTGTC
CTACGAGGACGGTACCCCGGCTACGGTTGAACAAATGGCTTTTGACGTGGTGAATTTTCTTCAGTGGGCATCCGAATACG
AGATGGAACATCGCAAGAGACTTGGGTTAAAAGTGATGGGATTCCTTTCGATATTACTAGTACTCTCATGGGTTTCGAAC
AAACGCATTTGGAAGGATATTAAGCAGGTAAGTAATGATGGCACATCCTAA

Upstream 100 bases:

>100_bases
GGTTGTGCTGCCTATCTTAGGGAAGCTTGAGAAAACGCTACCGCTACCAAAAAGTATTGAGGAAAGCCTCAAGGAGAGCA
ACAAAGAGTAGGTCTGTGAT

Downstream 100 bases:

>100_bases
ATGGATTTCTCATATTATAATAACCAGGTTGTTATCGCTTTTGTTGTATTAATCCAATGCGTTCGTTGCGCGTAAAGTGT
TTTTTTCTGTTGTTTCTTTT

Product: ubiquinol-cytochrome c reductase, cytochrome c1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MKKYFFIALLLCQVSALASEGSFEPKELVKMSWSFEGPLGTFDKQAIKRGLKVYQQVCAACHSLNRISFRHLLGAGFTPE
EAKLIASEYQVKDGPNDDGEYYERPGMLSDYFVPPYANRKAAEAANNAAYPPDLSLIARGRIGGANYLYSLLIGFTDDEA
PEGLYSNPYFSTGKIAMAPPLSEDIVSYEDGTPATVEQMAFDVVNFLQWASEYEMEHRKRLGLKVMGFLSILLVLSWVSN
KRIWKDIKQVSNDGTS

Sequences:

>Translated_256_residues
MKKYFFIALLLCQVSALASEGSFEPKELVKMSWSFEGPLGTFDKQAIKRGLKVYQQVCAACHSLNRISFRHLLGAGFTPE
EAKLIASEYQVKDGPNDDGEYYERPGMLSDYFVPPYANRKAAEAANNAAYPPDLSLIARGRIGGANYLYSLLIGFTDDEA
PEGLYSNPYFSTGKIAMAPPLSEDIVSYEDGTPATVEQMAFDVVNFLQWASEYEMEHRKRLGLKVMGFLSILLVLSWVSN
KRIWKDIKQVSNDGTS
>Mature_256_residues
MKKYFFIALLLCQVSALASEGSFEPKELVKMSWSFEGPLGTFDKQAIKRGLKVYQQVCAACHSLNRISFRHLLGAGFTPE
EAKLIASEYQVKDGPNDDGEYYERPGMLSDYFVPPYANRKAAEAANNAAYPPDLSLIARGRIGGANYLYSLLIGFTDDEA
PEGLYSNPYFSTGKIAMAPPLSEDIVSYEDGTPATVEQMAFDVVNFLQWASEYEMEHRKRLGLKVMGFLSILLVLSWVSN
KRIWKDIKQVSNDGTS

Specific function: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. c1 functions as an electron donor to cytochrome c [H]

COG id: COG2857

COG function: function code C; Cytochrome c1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Homo sapiens, GI21359867, Length=192, Percent_Identity=53.6458333333333, Blast_Score=222, Evalue=2e-58,
Organism=Caenorhabditis elegans, GI17506225, Length=224, Percent_Identity=42.4107142857143, Blast_Score=145, Evalue=2e-35,
Organism=Saccharomyces cerevisiae, GI6324639, Length=222, Percent_Identity=50.4504504504504, Blast_Score=222, Evalue=4e-59,
Organism=Drosophila melanogaster, GI24658292, Length=220, Percent_Identity=49.5454545454545, Blast_Score=218, Evalue=3e-57,
Organism=Drosophila melanogaster, GI21358225, Length=221, Percent_Identity=46.1538461538462, Blast_Score=201, Evalue=3e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005797
- InterPro:   IPR002326
- InterPro:   IPR021157
- InterPro:   IPR009056
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00032 Cytochrom_B_C; PF00033 Cytochrom_B_N; PF02167 Cytochrom_C1 [H]

EC number: NA

Molecular weight: Translated: 28573; Mature: 28573

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYFFIALLLCQVSALASEGSFEPKELVKMSWSFEGPLGTFDKQAIKRGLKVYQQVCAA
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
CHSLNRISFRHLLGAGFTPEEAKLIASEYQVKDGPNDDGEYYERPGMLSDYFVPPYANRK
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCH
AAEAANNAAYPPDLSLIARGRIGGANYLYSLLIGFTDDEAPEGLYSNPYFSTGKIAMAPP
HHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCC
LSEDIVSYEDGTPATVEQMAFDVVNFLQWASEYEMEHRKRLGLKVMGFLSILLVLSWVSN
CHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
KRIWKDIKQVSNDGTS
HHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKYFFIALLLCQVSALASEGSFEPKELVKMSWSFEGPLGTFDKQAIKRGLKVYQQVCAA
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
CHSLNRISFRHLLGAGFTPEEAKLIASEYQVKDGPNDDGEYYERPGMLSDYFVPPYANRK
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCH
AAEAANNAAYPPDLSLIARGRIGGANYLYSLLIGFTDDEAPEGLYSNPYFSTGKIAMAPP
HHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCC
LSEDIVSYEDGTPATVEQMAFDVVNFLQWASEYEMEHRKRLGLKVMGFLSILLVLSWVSN
CHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
KRIWKDIKQVSNDGTS
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2541921; 12597275 [H]