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The map label for this gene is secB

Identifier: 88608713

GI number: 88608713

Start: 294217

End: 294711

Strand: Reverse

Name: secB

Synonym: NSE_0359

Alternate gene names: 88608713

Gene position: 294711-294217 (Counterclockwise)

Preceding gene: 88608711

Following gene: 88608785

Centisome position: 34.31

GC content: 44.04

Gene sequence:

>495_bases
ATGCCCGACAAAGACGAAATCACCCATGATGCACAATCCGAAAACGAAGAAAGCCTCCCATTGGCACGGCCTGAAGGTCA
ATTCATGAAGTCAATAGCTCTTGACACGCCTAACTCTCCGGAGGTGTTTAGCATCATGAAAAATCCTCCGGAGGTGGATG
TGCAGTGCAATATAGACAGCAGAGCAATAGATGAGAGAAACGGTGTATACGAAGTGGTTCTTGATTTAAAAACTGAAGCA
CGGATAAAGGATAAAGACTCTCCAGATGAAACACGTGTTGCGTTCGTTTGTAAGTTGAAGTACTGCGGTGTCTTCACGAT
AAAGAATCTCACTCAGGAACAACTGAGGCAGACATTACTTGTCGAAGCGCCTACGTTACTCTTTCCGTTTGCAAGGAGAA
TTATAGCTACGGCAACAACTGATGCAGGTTTCCCACCTTTGATGCTTGCACCTATAAATTTTGCTCAAAAATACGCTGAG
AGTCAAAGAGATTAG

Upstream 100 bases:

>100_bases
AAACAGCGCTACTAAACCAACAAATGTAAAGGTGGACAAAACGCCACACTTACTCTAACCTACATCTACAGTATCACTTA
TATTTCTAAAGAATACAAAA

Downstream 100 bases:

>100_bases
CTGTTTTCCGGGTTTGCGTTCTGCTTCCGCATATTTCTGATACCTTGCCCTGTTTTTCAGTTTTGTTGGATGCAGATTCG
CTTTGCGGTGTGTTACGGGG

Product: putative protein-export protein SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MPDKDEITHDAQSENEESLPLARPEGQFMKSIALDTPNSPEVFSIMKNPPEVDVQCNIDSRAIDERNGVYEVVLDLKTEA
RIKDKDSPDETRVAFVCKLKYCGVFTIKNLTQEQLRQTLLVEAPTLLFPFARRIIATATTDAGFPPLMLAPINFAQKYAE
SQRD

Sequences:

>Translated_164_residues
MPDKDEITHDAQSENEESLPLARPEGQFMKSIALDTPNSPEVFSIMKNPPEVDVQCNIDSRAIDERNGVYEVVLDLKTEA
RIKDKDSPDETRVAFVCKLKYCGVFTIKNLTQEQLRQTLLVEAPTLLFPFARRIIATATTDAGFPPLMLAPINFAQKYAE
SQRD
>Mature_163_residues
PDKDEITHDAQSENEESLPLARPEGQFMKSIALDTPNSPEVFSIMKNPPEVDVQCNIDSRAIDERNGVYEVVLDLKTEAR
IKDKDSPDETRVAFVCKLKYCGVFTIKNLTQEQLRQTLLVEAPTLLFPFARRIIATATTDAGFPPLMLAPINFAQKYAES
QRD

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=127, Percent_Identity=31.496062992126, Blast_Score=77, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_NEOSM (Q2GE48)

Other databases:

- EMBL:   CP000237
- RefSeq:   YP_506248.1
- ProteinModelPortal:   Q2GE48
- SMR:   Q2GE48
- STRING:   Q2GE48
- GeneID:   3931547
- GenomeReviews:   CP000237_GR
- KEGG:   nse:NSE_0359
- TIGR:   NSE_0359
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   Q2GE48
- ProtClustDB:   CLSK2528099
- BioCyc:   NSEN222891:NSE_0359-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 18473; Mature: 18342

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDKDEITHDAQSENEESLPLARPEGQFMKSIALDTPNSPEVFSIMKNPPEVDVQCNIDS
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCEEEECCCC
RAIDERNGVYEVVLDLKTEARIKDKDSPDETRVAFVCKLKYCGVFTIKNLTQEQLRQTLL
HHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCEEHHHHHHHHHHHHHHH
VEAPTLLFPFARRIIATATTDAGFPPLMLAPINFAQKYAESQRD
HCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHCCC
>Mature Secondary Structure 
PDKDEITHDAQSENEESLPLARPEGQFMKSIALDTPNSPEVFSIMKNPPEVDVQCNIDS
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCEEEECCCC
RAIDERNGVYEVVLDLKTEARIKDKDSPDETRVAFVCKLKYCGVFTIKNLTQEQLRQTLL
HHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCEEHHHHHHHHHHHHHHH
VEAPTLLFPFARRIIATATTDAGFPPLMLAPINFAQKYAESQRD
HCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA