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The map label for this gene is secF [H]

Identifier: 88608603

GI number: 88608603

Start: 341123

End: 342019

Strand: Reverse

Name: secF [H]

Synonym: NSE_0417

Alternate gene names: 88608603

Gene position: 342019-341123 (Counterclockwise)

Preceding gene: 88608441

Following gene: 88608634

Centisome position: 39.82

GC content: 39.35

Gene sequence:

>897_bases
GTGAGATTCATCATAAGCAGTCTCTTAGATGGATGCAACTTTGACTTTGCTAAGTATAAGAAAGCTGCCTTCTTCATAAG
TTCGACTCTGCTGGTGGTGACGTTTGTACTTCTTAAAACAAAAGGTTTGAGTTTTGGTATTGATTTCACAGGTGGAATAG
TACTCGAGGTGTACTCTGAGGAAGGTATCGATATAACACAACTTAGAGGCGATTTTTCGAAAAATCAGAATCTACCGACT
GCATCTATACATTATTTAGAAGATCAAAGGCACCTAATGATAAAAGTACGATCACAAGATTTTCAGGATGGCCTGACAAA
AATGAAATCCTTTCTTAAGCCATATAACTTTCGCTACGACAAAATAGATTGTGTGGGTCCCCAAATAAGCAAGTCTCTCA
TATACAGGAGCGGTGTGGCAATTGTATTTTCAGTGCTTGCGATGTTCGTATATTTATTTTTTAGGTTTACTCCTGCCTTT
GCGCTATCAGGTGTCCTGACAACACTGCACGACATTACTTTGCTTATATGTCTCTACTCTGCTTACGAATTGGAGTTCAA
TACCTCTTCAGTGGCTGCGGTACTCGCAATAGTTGGGTATTCTATAAATGACTCTGTAGTTATTTTTGATAAGTTGCGTG
AGAACATTGGCATAAAAAACATAGCCAAGCGCATTAATGTAAGCGTCAACACGACTCTATCCAGAACAATTCTTACGTCT
GTAACGACAATGCTTGCAATAGCACCAGTGATATTTCTCTCAAGCGGGGATATACAAGTTTTTTCCTTCATAATACTAGC
AGGCATAGCTATAGGTACTTACTCCTCGATTTTTATCGCGGCACCGCTTGCACTCCTAGGAAACGATGTACATGAAGTGA
ACCATGAGAATTCGTAA

Upstream 100 bases:

>100_bases
AAGTTCAGTAGCACGAGGTTGCGATTATATGCACCTAACGGACCGTGAATTTGCAATTTGCACGCATTGATAATAGTATT
TCTGTTTTTGGGTACCGCAG

Downstream 100 bases:

>100_bases
TTTTTACATACGACGAACTTTATATATCTCTTCGCATTAGAGTTGGAAGCGTCAGTATTTCAGAGTAAAGATATAAGCTA
AGCGGCTTGTATGTGAACCC

Product: putative protein-export membrane protein SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MRFIISSLLDGCNFDFAKYKKAAFFISSTLLVVTFVLLKTKGLSFGIDFTGGIVLEVYSEEGIDITQLRGDFSKNQNLPT
ASIHYLEDQRHLMIKVRSQDFQDGLTKMKSFLKPYNFRYDKIDCVGPQISKSLIYRSGVAIVFSVLAMFVYLFFRFTPAF
ALSGVLTTLHDITLLICLYSAYELEFNTSSVAAVLAIVGYSINDSVVIFDKLRENIGIKNIAKRINVSVNTTLSRTILTS
VTTMLAIAPVIFLSSGDIQVFSFIILAGIAIGTYSSIFIAAPLALLGNDVHEVNHENS

Sequences:

>Translated_298_residues
MRFIISSLLDGCNFDFAKYKKAAFFISSTLLVVTFVLLKTKGLSFGIDFTGGIVLEVYSEEGIDITQLRGDFSKNQNLPT
ASIHYLEDQRHLMIKVRSQDFQDGLTKMKSFLKPYNFRYDKIDCVGPQISKSLIYRSGVAIVFSVLAMFVYLFFRFTPAF
ALSGVLTTLHDITLLICLYSAYELEFNTSSVAAVLAIVGYSINDSVVIFDKLRENIGIKNIAKRINVSVNTTLSRTILTS
VTTMLAIAPVIFLSSGDIQVFSFIILAGIAIGTYSSIFIAAPLALLGNDVHEVNHENS
>Mature_298_residues
MRFIISSLLDGCNFDFAKYKKAAFFISSTLLVVTFVLLKTKGLSFGIDFTGGIVLEVYSEEGIDITQLRGDFSKNQNLPT
ASIHYLEDQRHLMIKVRSQDFQDGLTKMKSFLKPYNFRYDKIDCVGPQISKSLIYRSGVAIVFSVLAMFVYLFFRFTPAF
ALSGVLTTLHDITLLICLYSAYELEFNTSSVAAVLAIVGYSINDSVVIFDKLRENIGIKNIAKRINVSVNTTLSRTILTS
VTTMLAIAPVIFLSSGDIQVFSFIILAGIAIGTYSSIFIAAPLALLGNDVHEVNHENS

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=284, Percent_Identity=30.2816901408451, Blast_Score=142, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 33018; Mature: 33018

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFIISSLLDGCNFDFAKYKKAAFFISSTLLVVTFVLLKTKGLSFGIDFTGGIVLEVYSE
CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECC
EGIDITQLRGDFSKNQNLPTASIHYLEDQRHLMIKVRSQDFQDGLTKMKSFLKPYNFRYD
CCCCHHHHCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCC
KIDCVGPQISKSLIYRSGVAIVFSVLAMFVYLFFRFTPAFALSGVLTTLHDITLLICLYS
CEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYELEFNTSSVAAVLAIVGYSINDSVVIFDKLRENIGIKNIAKRINVSVNTTLSRTILTS
HHEEEECCHHHHHHHHHHCCCCCCCEEEHHHHHHCCCHHHHHHHHCCEECCHHHHHHHHH
VTTMLAIAPVIFLSSGDIQVFSFIILAGIAIGTYSSIFIAAPLALLGNDVHEVNHENS
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
>Mature Secondary Structure
MRFIISSLLDGCNFDFAKYKKAAFFISSTLLVVTFVLLKTKGLSFGIDFTGGIVLEVYSE
CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECC
EGIDITQLRGDFSKNQNLPTASIHYLEDQRHLMIKVRSQDFQDGLTKMKSFLKPYNFRYD
CCCCHHHHCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCC
KIDCVGPQISKSLIYRSGVAIVFSVLAMFVYLFFRFTPAFALSGVLTTLHDITLLICLYS
CEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYELEFNTSSVAAVLAIVGYSINDSVVIFDKLRENIGIKNIAKRINVSVNTTLSRTILTS
HHEEEECCHHHHHHHHHHCCCCCCCEEEHHHHHHCCCHHHHHHHHCCEECCHHHHHHHHH
VTTMLAIAPVIFLSSGDIQVFSFIILAGIAIGTYSSIFIAAPLALLGNDVHEVNHENS
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]