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The map label for this gene is yfiA [C]

Identifier: 88608249

GI number: 88608249

Start: 282179

End: 282739

Strand: Direct

Name: yfiA [C]

Synonym: NSE_0343

Alternate gene names: 88608249

Gene position: 282179-282739 (Clockwise)

Preceding gene: 88608360

Following gene: 88608869

Centisome position: 32.85

GC content: 36.54

Gene sequence:

>561_bases
ATGAAAGTAACAGTTTCTGGGCATGGTTTTGATTTAGGTTCTAGCTTATCTGAGTATATCACTGATCGGATTCTTTTTAG
TGTGAAGAAACATCTCGTACAAGCTGTGGGTGCTCGTGTTTCACTTTCTAAGGAAGGACGCTTCTTTCACGTAGATGTGA
TCGTAAATAGCCCTATATCGCTAATTAAAGCAAGTGGCGAGTCTCATGATCCGTATCTAGCTTTTGATAGTGCTTTTTCA
AAAATATTATTAAAGTTGCGTCGATATAAAGATAGGTTAAAGGAGCATAAATCAGAGGCCAAGTGCAGCATGAAATTTGC
TCTACATCATCATGAGTATGAAACACAAGGGCCAAGGGCTATTCTGGTTAAAGAGGAGAAAATTCATCTTAGGCAGCTTT
CTCTAGAGGAAGCCATAATGCATATGGACCTTATGGCACTGCCCGCTTTTGTTTTTATTAATCTTGAAACGAATAAGTTG
AATATAATTCATAAAGAAGATAACTCAAAAGAGACTATTGTTCTTCTAGATACAAACCAAGAGTTTAAAGAGATAGATTA
A

Upstream 100 bases:

>100_bases
TACTTTTTTGTGTCCGGAGAGATTCTAAGTGTACTTTTGCTTGGTTTCCGCGGTGTAATCTTTTTGCTAATCTTACCCTT
TGAGTTGAGTATTTTTAGAG

Downstream 100 bases:

>100_bases
TCCTTGATAGCAAGGTGATTGATGATTCGTATTTATAGTATTTATATATTGCTTGCTGTGGCGGTAGTAGCTTGGATAGG
TTCTTGTGTATATTCTTCCT

Product: ribosomal subunit interface protein

Products: NA

Alternate protein names: ORF203 [H]

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MKVTVSGHGFDLGSSLSEYITDRILFSVKKHLVQAVGARVSLSKEGRFFHVDVIVNSPISLIKASGESHDPYLAFDSAFS
KILLKLRRYKDRLKEHKSEAKCSMKFALHHHEYETQGPRAILVKEEKIHLRQLSLEEAIMHMDLMALPAFVFINLETNKL
NIIHKEDNSKETIVLLDTNQEFKEID

Sequences:

>Translated_186_residues
MKVTVSGHGFDLGSSLSEYITDRILFSVKKHLVQAVGARVSLSKEGRFFHVDVIVNSPISLIKASGESHDPYLAFDSAFS
KILLKLRRYKDRLKEHKSEAKCSMKFALHHHEYETQGPRAILVKEEKIHLRQLSLEEAIMHMDLMALPAFVFINLETNKL
NIIHKEDNSKETIVLLDTNQEFKEID
>Mature_186_residues
MKVTVSGHGFDLGSSLSEYITDRILFSVKKHLVQAVGARVSLSKEGRFFHVDVIVNSPISLIKASGESHDPYLAFDSAFS
KILLKLRRYKDRLKEHKSEAKCSMKFALHHHEYETQGPRAILVKEEKIHLRQLSLEEAIMHMDLMALPAFVFINLETNKL
NIIHKEDNSKETIVLLDTNQEFKEID

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

None

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 21301; Mature: 21301

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVTVSGHGFDLGSSLSEYITDRILFSVKKHLVQAVGARVSLSKEGRFFHVDVIVNSPIS
CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEEEECCCCE
LIKASGESHDPYLAFDSAFSKILLKLRRYKDRLKEHKSEAKCSMKFALHHHEYETQGPRA
EEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEE
ILVKEEKIHLRQLSLEEAIMHMDLMALPAFVFINLETNKLNIIHKEDNSKETIVLLDTNQ
EEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCEEEEEECCCCCCCEEEEEECCC
EFKEID
HHHCCC
>Mature Secondary Structure
MKVTVSGHGFDLGSSLSEYITDRILFSVKKHLVQAVGARVSLSKEGRFFHVDVIVNSPIS
CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEEEECCCCE
LIKASGESHDPYLAFDSAFSKILLKLRRYKDRLKEHKSEAKCSMKFALHHHEYETQGPRA
EEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEE
ILVKEEKIHLRQLSLEEAIMHMDLMALPAFVFINLETNKLNIIHKEDNSKETIVLLDTNQ
EEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCEEEEEECCCCCCCEEEEEECCC
EFKEID
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1991712; 12597275 [H]