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The map label for this gene is atpH

Identifier: 88608208

GI number: 88608208

Start: 109516

End: 110040

Strand: Reverse

Name: atpH

Synonym: NSE_0132

Alternate gene names: 88608208

Gene position: 110040-109516 (Counterclockwise)

Preceding gene: 88608505

Following gene: 88608054

Centisome position: 12.81

GC content: 41.33

Gene sequence:

>525_bases
ATGCAACAGTACATAGCCGGTAGATATGCGCAGTCCTTGTATGCAGTTTGCGGTCCCAGATTGGAGAGTGATGCTAATAA
GTTCTTGGGTTTGCTCAGTGAAAACAACTTCCTTTCTTTCGCAAAGGTAAAGACCAGCACCAAGCTACATGTGCTTGATA
GACTGCATCTCCCGTGCGAACTTAAAAATTTATGTAAGCTCCTTCTTGCAAATCACCGTGGCTTTCTCTGCACTACAGTA
CTGCTAGGGTACATAGAAATAGTGAAAAAAAACAGGAAAGAGGCAGACGCAAGGGTGGAGTCGTATAGCCGCTTAAGTGC
CACGGCTAAAAAGGAAGTTGCGGATGCACTGCTTATCAAATTCCCTTATCTGAAAAAGATTAACATCGCTCAAAAAGTGA
ATCGCTCTATCCTGGGCGGACTGACAATTAAAATAAATTCAATAATGATAGACCTTTCCATCGCTGGAAGGTTAGCAAAA
TGTAAAAGTATAGGACAAAGTACAATTCTCGAGATATTTCAATAA

Upstream 100 bases:

>100_bases
AAAAATAATTTGTGCTAAGACGAAAGAAGGAGTACGGTTGGATTTGCAAAAATGCTCAAGCTGTAAGAGAATGTGCCTGT
GTGTTCGTGCAGCAAAGTAA

Downstream 100 bases:

>100_bases
GAAGGAAAAAATGAGTTTAGACGTTAATGCATCCGAAGTTTTAAGGATAATAAAGGAAAAAATCAAAGATTTTGATCAGC
AGATTTTTTCCGAAGAAATA

Product: ATP synthase F1 subunit delta

Products: NA

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MQQYIAGRYAQSLYAVCGPRLESDANKFLGLLSENNFLSFAKVKTSTKLHVLDRLHLPCELKNLCKLLLANHRGFLCTTV
LLGYIEIVKKNRKEADARVESYSRLSATAKKEVADALLIKFPYLKKINIAQKVNRSILGGLTIKINSIMIDLSIAGRLAK
CKSIGQSTILEIFQ

Sequences:

>Translated_174_residues
MQQYIAGRYAQSLYAVCGPRLESDANKFLGLLSENNFLSFAKVKTSTKLHVLDRLHLPCELKNLCKLLLANHRGFLCTTV
LLGYIEIVKKNRKEADARVESYSRLSATAKKEVADALLIKFPYLKKINIAQKVNRSILGGLTIKINSIMIDLSIAGRLAK
CKSIGQSTILEIFQ
>Mature_174_residues
MQQYIAGRYAQSLYAVCGPRLESDANKFLGLLSENNFLSFAKVKTSTKLHVLDRLHLPCELKNLCKLLLANHRGFLCTTV
LLGYIEIVKKNRKEADARVESYSRLSATAKKEVADALLIKFPYLKKINIAQKVNRSILGGLTIKINSIMIDLSIAGRLAK
CKSIGQSTILEIFQ

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_NEOSM (Q2GER4)

Other databases:

- EMBL:   CP000237
- RefSeq:   YP_506032.1
- ProteinModelPortal:   Q2GER4
- SMR:   Q2GER4
- STRING:   Q2GER4
- GeneID:   3931678
- GenomeReviews:   CP000237_GR
- KEGG:   nse:NSE_0132
- TIGR:   NSE_0132
- eggNOG:   COG0712
- OMA:   KINSIMI
- ProtClustDB:   CLSK2527777
- BioCyc:   NSEN222891:NSE_0132-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- InterPro:   IPR020781
- PANTHER:   PTHR11910
- PRINTS:   PR00125

Pfam domain/function: PF00213 OSCP

EC number: NA

Molecular weight: Translated: 19443; Mature: 19443

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQYIAGRYAQSLYAVCGPRLESDANKFLGLLSENNFLSFAKVKTSTKLHVLDRLHLPCE
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEHHHHHCCCHHHHHHHCCCCCC
LKNLCKLLLANHRGFLCTTVLLGYIEIVKKNRKEADARVESYSRLSATAKKEVADALLIK
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FPYLKKINIAQKVNRSILGGLTIKINSIMIDLSIAGRLAKCKSIGQSTILEIFQ
CCCHHHHHHHHHHHHHHHCCEEEEEEEEEEEHHHHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure
MQQYIAGRYAQSLYAVCGPRLESDANKFLGLLSENNFLSFAKVKTSTKLHVLDRLHLPCE
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEHHHHHCCCHHHHHHHCCCCCC
LKNLCKLLLANHRGFLCTTVLLGYIEIVKKNRKEADARVESYSRLSATAKKEVADALLIK
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FPYLKKINIAQKVNRSILGGLTIKINSIMIDLSIAGRLAKCKSIGQSTILEIFQ
CCCHHHHHHHHHHHHHHHCCEEEEEEEEEEEHHHHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA