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The map label for this gene is tadA [H]

Identifier: 88608086

GI number: 88608086

Start: 73527

End: 73961

Strand: Direct

Name: tadA [H]

Synonym: NSE_0085

Alternate gene names: 88608086

Gene position: 73527-73961 (Clockwise)

Preceding gene: 88608306

Following gene: 88608442

Centisome position: 8.56

GC content: 42.3

Gene sequence:

>435_bases
ATGGATAAGAAGTTCATGGAGCTAGCAATGAGTGTTGCTCGTCAGTCTGATTGTGAAGTGCCTGTTGGGGCGGTCCTAGT
TAGGCAGGGTGCTGTTATTGCCTCATCTGGTAATCGTGTTTTTCGAGATTCTGATCCTACAGCGCATGCCGAAATGTTTG
TTATAAGAGAAGCAATCCAAAGGCTGGGTGTAAAGTTTCTTGTGGATTTCGAACTGTATGTAACGTTGGAGCCATGTCCG
ATGTGTATGTATGCGATGTCTTTAAGCAGGGTCGGTACACTTTGTTTTGCCGCGTATGACGAAAAACGTGGTGCCATTTC
AAATGGCTGTCTTGGTACGGGAACTTATTTTCATGTACCAATAATATATGAAGGCCTTATGGAGGATGAAGCTAAGGAGC
TTTTATCCAGTTTTTTTCGTATTTTAAGAAATTAA

Upstream 100 bases:

>100_bases
TTTTTGGTTGGGCAAGTGATTAAGAAAAGCAACGGGAATGCAAGTCCCCATTTGGTAAACAAAGTTTTACTTGAGGAACT
CGAAAGGCGTCGCGCACAGA

Downstream 100 bases:

>100_bases
ATACTGAGTGGAAACATTTAGCTTTTTCTATAATCTGCAATGTGCGCCGCATAGCGCTAGCAAATAAGTTAGAGTAAAGC
GTGTAGCTACTCTATGTCGA

Product: cytidine/deoxycytidylate deaminase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MDKKFMELAMSVARQSDCEVPVGAVLVRQGAVIASSGNRVFRDSDPTAHAEMFVIREAIQRLGVKFLVDFELYVTLEPCP
MCMYAMSLSRVGTLCFAAYDEKRGAISNGCLGTGTYFHVPIIYEGLMEDEAKELLSSFFRILRN

Sequences:

>Translated_144_residues
MDKKFMELAMSVARQSDCEVPVGAVLVRQGAVIASSGNRVFRDSDPTAHAEMFVIREAIQRLGVKFLVDFELYVTLEPCP
MCMYAMSLSRVGTLCFAAYDEKRGAISNGCLGTGTYFHVPIIYEGLMEDEAKELLSSFFRILRN
>Mature_144_residues
MDKKFMELAMSVARQSDCEVPVGAVLVRQGAVIASSGNRVFRDSDPTAHAEMFVIREAIQRLGVKFLVDFELYVTLEPCP
MCMYAMSLSRVGTLCFAAYDEKRGAISNGCLGTGTYFHVPIIYEGLMEDEAKELLSSFFRILRN

Specific function: Deaminates adenosine-34 to inosine in tRNA-Arg2 [H]

COG id: COG0590

COG function: function code FJ; Cytosine/adenosine deaminases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]

Homologues:

Organism=Escherichia coli, GI145693172, Length=144, Percent_Identity=42.3611111111111, Blast_Score=101, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17554608, Length=109, Percent_Identity=37.6146788990826, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17541138, Length=149, Percent_Identity=30.8724832214765, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1 [H]

EC number: NA

Molecular weight: Translated: 16062; Mature: 16062

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
9.0 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
9.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKFMELAMSVARQSDCEVPVGAVLVRQGAVIASSGNRVFRDSDPTAHAEMFVIREAIQ
CCHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEECCCCEEECCCCCCHHHHHHHHHHHHH
RLGVKFLVDFELYVTLEPCPMCMYAMSLSRVGTLCFAAYDEKRGAISNGCLGTGTYFHVP
HCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHH
IIYEGLMEDEAKELLSSFFRILRN
HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKKFMELAMSVARQSDCEVPVGAVLVRQGAVIASSGNRVFRDSDPTAHAEMFVIREAIQ
CCHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEECCCCEEECCCCCCHHHHHHHHHHHHH
RLGVKFLVDFELYVTLEPCPMCMYAMSLSRVGTLCFAAYDEKRGAISNGCLGTGTYFHVP
HCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHH
IIYEGLMEDEAKELLSSFFRILRN
HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]