Click here to switch to the map view.

The map label for this gene is prfB

Identifier: 88607992

GI number: 88607992

Start: 527159

End: 527227

Strand: Direct

Name: prfB

Synonym: NSE_0604

Alternate gene names: NA

Gene position: 527159-527227 (Clockwise)

Preceding gene: 88608648

Following gene: 88608515

Centisome position: 61.37

GC content: 37.68

Gene sequence:

>1099_bases
ATGGATTTTGAAACACAAGTAGTACTGCATAATTTGAAGAAGTCTGTCGAAGTAATCAGGAGGCAGCTTTGACATCGAGA
AGAAGCACAGTCGTTTGGAAGAGATCCAAGCTCTAGTTGATTCTCCCACACTCTGGGAAGATCAATCCAGGGCACAGCTC
TTGCTCAAAGAGAAATCACAAATAGAGACAAGCCTAAAAGAATTCAAAGAACTTTCGATTCAGCTCGATGACCTAATCGA
AATGATTGAGCTTGCGTCGAAGGACCACGAAGAAGAAACAATGAAAGATCTTGAAAGAGAGCTTTTATTGCTCAAGGAGA
AAATCCAAAAAAAAGAGATAGAATGCCTTTTTTCAGGTGAGGCAGACGGTAACGATTGTCTTCTAGAAATACAATCCGGC
GCAGGCGGAACAGAGAGCAATGATTGGGCAATGATGTTACTGAGGATGTATACGAGATGGGCAGAAATTTATCACAAATT
CCAAGTTCAGATTGTAGACAAAGTTGAAGGAGAGGAGACTGGAATAAAATCCTGCACGCTCAAGGTAATGGGAAAGAATG
CTTACGGCTGGGCTAGAACGGAAACTGGAGTACATAGGTTGGTAAGAATTTCCCCGTTTGACGCGAATGCAAAGCGCCAC
ACAAGTTTTGCCAAAATTTTCGTTTCACCATGTATAGAAGGTGAGATCAACATCAGCATTGATGAAAAAGACCTCAAGAT
TGATACATATAGAGCTTCGGGCGCAGGTGGACAGCACGTAAACAAGACTGAAAGCGCCATCAGAATTACTCATTTGCCGA
GTAAAATAGTTGTACAATCGCAAAGCAGCAGATCACAGCACCAGAACAAAGCAGAGGCAATGCAAATGCTAAAGTCCAGG
TTATACGAGATAGAACTCCGCAAAAAAGAAGAAAAACTCAACGCTGCACGTAATGTGGAAGACTCCATTGGCTGGGGTTA
CCAGATTAGATCATACGTGCTGCACCCATATCAGATGATAAAAGACCTTCGTACTGGACACGAAGTAGGAAACATCACCT
CGGTTCTTGATGGTGATCTGGACTCTTTTATTATCGCTACCATATCTAACAATTCCTGA

Upstream 100 bases:

>100_bases
CCTAGGGTGAAATAGTTTGGAGAAAATAACACACGATAAACCCGTCCTTTGACTTAAAGAACACCTGAAGTACAATCACC
TCGTATGATAAATAAAAGCA

Downstream 100 bases:

>100_bases
AGATTCATCTTCTAGAGGTTACTCTGGTTCCGCACAACTCACTCACCTGAACCCACGCTTACAAAACTCGAGCCCATACA
TCTCTTAATGGCGCTTGCAA

Product: peptide chain release factor 2, programmed frameshift

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 23; Mature: 23

Protein sequence:

>365_residues
MDFETQVVLHNLKKSVEVIRRQLDIEKKHSRLEEIQALVDSPTLWEDQSRAQLLLKEKSQIETSLKEFKELSIQLDDLIE
MIELASKDHEEETMKDLERELLLLKEKIQKKEIECLFSGEADGNDCLLEIQSGAGGTESNDWAMMLLRMYTRWAEIYHKF
QVQIVDKVEGEETGIKSCTLKVMGKNAYGWARTETGVHRLVRISPFDANAKRHTSFAKIFVSPCIEGEINISIDEKDLKI
DTYRASGAGGQHVNKTESAIRITHLPSKIVVQSQSSRSQHQNKAEAMQMLKSRLYEIELRKKEEKLNAARNVEDSIGWGY
QIRSYVLHPYQMIKDLRTGHEVGNITSVLDGDLDSFIIATISNNS

Sequences:

>Translated_23_residues
MDFETQVVLHNLKKSVEVIRRQL
>Mature_23_residues
MDFETQVVLHNLKKSVEVIRRQL

Specific function: Unknown

COG id: COG1186

COG function: function code J; Protein chain release factor B

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 2783; Mature: 2783

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFETQVVLHNLKKSVEVIRRQL
CCCHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDFETQVVLHNLKKSVEVIRRQL
CCCHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA