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The map label for this gene is virB8

Identifier: 88607942

GI number: 88607942

Start: 1465674

End: 1466390

Strand: Reverse

Name: virB8

Synonym: APH_1406

Alternate gene names: NA

Gene position: 1466390-1465674 (Counterclockwise)

Preceding gene: 88607595

Following gene: 88607325

Centisome position: 99.67

GC content: 41.84

Gene sequence:

>717_bases
TTGGTATTGGATATGTTTGGTCTTGGAAAGGAAAAAAAAAAGCCCGTGACAGGTTCTGAGCGCGATTGCGTGTCGGGAAA
GATCGGAGATTGGTATCATGACAGATACGGTTCCGTGGTCGTGCAGCGCAATATACTCCTTCTTCTTGTAGTGTTGTCGG
TATTTTGTATCGCTGTAAGTACTTTCGTCATTTTCAGAATAGGGAAAACAAGAACAATAGAACCCTTCGTTGTAGAAATA
GAAAAGAAGTCAGGGATTACAACGCTAGTAAACCCGATGACTGTAAAACAGTATTCTGCCGACGAGGTATTAAGTAATTA
TTTTATAGTGGAGTACATAAAGGCTCGTGAGCTCTATGATCCCAACAATTTCCAGTATAACTACTATACGAGAGTACGTC
TCCTTTCGTCCCAAGAAACCTATAGCGAGTTTCGTAGTTGGATACGTCCTAGTAACCCTTCTAGTCCTATGACGCTTTAT
TCGGATGTTGTATCAGGAGCTCTAAAAGTGCGCTCTCTGCAACATCTAGAAGGAGGGCAGGTTCAGGTGCGGTTTACTAT
GGAATTCGTTAATCATAGCGGCTCGATTGTAAAGAGAGATAGAATTGCTACTCTTTCCTTTAGGTATTCCTCTCTTGAGA
TGACTGAACAAGATAGACAGGTGAACCCTTTGGGCTTCCAGATCACTTACTATAGGGCGGATGATGAATTTCTATAA

Upstream 100 bases:

>100_bases
TGTTAACTTGATGTAAATAAAAGAATAGTAGGTTCTGATGATGTTTGGGCAGCCTTGCAATGGGGCTGGTTTCTCCACTG
CTTGGTTTTGTTTCAACTAG

Downstream 100 bases:

>100_bases
AAATTTTTATGTTGCTTTGGTAACGGCTTTCGCGCTGTTCTCTATGAGTAAAGCATGCTTTGCCAGCACAAATATTGGCG
TACCAGTTTCTGTAGATAGT

Product: type IV secretion protein VirB8

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MVLDMFGLGKEKKKPVTGSERDCVSGKIGDWYHDRYGSVVVQRNILLLLVVLSVFCIAVSTFVIFRIGKTRTIEPFVVEI
EKKSGITTLVNPMTVKQYSADEVLSNYFIVEYIKARELYDPNNFQYNYYTRVRLLSSQETYSEFRSWIRPSNPSSPMTLY
SDVVSGALKVRSLQHLEGGQVQVRFTMEFVNHSGSIVKRDRIATLSFRYSSLEMTEQDRQVNPLGFQITYYRADDEFL

Sequences:

>Translated_238_residues
MVLDMFGLGKEKKKPVTGSERDCVSGKIGDWYHDRYGSVVVQRNILLLLVVLSVFCIAVSTFVIFRIGKTRTIEPFVVEI
EKKSGITTLVNPMTVKQYSADEVLSNYFIVEYIKARELYDPNNFQYNYYTRVRLLSSQETYSEFRSWIRPSNPSSPMTLY
SDVVSGALKVRSLQHLEGGQVQVRFTMEFVNHSGSIVKRDRIATLSFRYSSLEMTEQDRQVNPLGFQITYYRADDEFL
>Mature_238_residues
MVLDMFGLGKEKKKPVTGSERDCVSGKIGDWYHDRYGSVVVQRNILLLLVVLSVFCIAVSTFVIFRIGKTRTIEPFVVEI
EKKSGITTLVNPMTVKQYSADEVLSNYFIVEYIKARELYDPNNFQYNYYTRVRLLSSQETYSEFRSWIRPSNPSSPMTLY
SDVVSGALKVRSLQHLEGGQVQVRFTMEFVNHSGSIVKRDRIATLSFRYSSLEMTEQDRQVNPLGFQITYYRADDEFL

Specific function: Unknown

COG id: COG3736

COG function: function code U; Type IV secretory pathway, component VirB8

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 27486; Mature: 27486

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLDMFGLGKEKKKPVTGSERDCVSGKIGDWYHDRYGSVVVQRNILLLLVVLSVFCIAVS
CEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEEHHHHHHHHHHHHHHHHHHH
TFVIFRIGKTRTIEPFVVEIEKKSGITTLVNPMTVKQYSADEVLSNYFIVEYIKARELYD
HHHHEECCCCCCCCCEEEEEECCCCCEEEECCEEEECCCHHHHHHHHHHHHHHHHHHCCC
PNNFQYNYYTRVRLLSSQETYSEFRSWIRPSNPSSPMTLYSDVVSGALKVRSLQHLEGGQ
CCCCEEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
VQVRFTMEFVNHSGSIVKRDRIATLSFRYSSLEMTEQDRQVNPLGFQITYYRADDEFL
EEEEEEEEECCCCCCEEECCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCC
>Mature Secondary Structure
MVLDMFGLGKEKKKPVTGSERDCVSGKIGDWYHDRYGSVVVQRNILLLLVVLSVFCIAVS
CEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEEHHHHHHHHHHHHHHHHHHH
TFVIFRIGKTRTIEPFVVEIEKKSGITTLVNPMTVKQYSADEVLSNYFIVEYIKARELYD
HHHHEECCCCCCCCCEEEEEECCCCCEEEECCEEEECCCHHHHHHHHHHHHHHHHHHCCC
PNNFQYNYYTRVRLLSSQETYSEFRSWIRPSNPSSPMTLYSDVVSGALKVRSLQHLEGGQ
CCCCEEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
VQVRFTMEFVNHSGSIVKRDRIATLSFRYSSLEMTEQDRQVNPLGFQITYYRADDEFL
EEEEEEEEECCCCCCEEECCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]