Click here to switch to the map view.

The map label for this gene is ygfZ [C]

Identifier: 88607941

GI number: 88607941

Start: 1338194

End: 1339021

Strand: Reverse

Name: ygfZ [C]

Synonym: APH_1270

Alternate gene names: 88607941

Gene position: 1339021-1338194 (Counterclockwise)

Preceding gene: 88607247

Following gene: 88607590

Centisome position: 91.01

GC content: 40.7

Gene sequence:

>828_bases
ATGTTTTTGAGTCAAAGTCGTGGTGTTATAAAAGTTTCAGGAGCAGACGCTGCGAAGTTCTTACATAACATCACAACCAA
CGATGTGCTCCAGATGGAATCTCCTTCGGCGGTATACAATTTGATTCTCAACTCAAAGGGAAGATTTTTGTTTGATTTCT
TTTTGATAAAATGTGACAAGCACTTTCTTCTGGACTGTGAGCGCGAAGCTATAATGCCGATAATAGAGCTTTTGCGACTA
TATCGGGTAGTATTAAAAGTAAAAATCAAGAGCTGTGACGAGTATTCTGTAGCTTTGGACACTAAGCAACGTTTGGGAGA
CCCTGGTTATACGAAAACTTTGGAAGATGGTACTATTGTTTTTCAGGATCCACGGTGTGTAAATATGGGTGTGCGATACA
TAGTACCTCATACAAGTTCCGTACAATATGACATGCCCACATCACAAACCAACACTGAATACAGCATGTTGAGAATGGTC
AATACTATACCCAACTGTGCCACTGATATGGTAAGCGGGGAATCATTCCCTCTACATTTTGGATTAGATAAGCTCAACGC
TATTAGCCACACAAAAGGCTGCTATACAGGGCAGGAAGTGGTTGCGAGGATGCACAGAATTGGTGCGAAAAAAACACTTC
GCACTGTCTTTTCTGAGAGTGGTATAAGTCTTCCACAGACGGGAGAAATTTTTGTAAATCAGCAATGTGTCGGTGAAATG
ATAACATCTACAGAAAATTGGGGACTATGCATGTTAGAAACATCGAAATTACCGACAGGTTACGTAGACTTGAGTATAGG
TGACATAAAGCTCACTCTGCAATCTTAG

Upstream 100 bases:

>100_bases
GAAAAAGAGACACGTTATAGATGTGCAAAGCATTATTTGAATTATATTCCATGTGTCAGTATCATCCACCTCATAGAAGC
GTGGAGTACACGGAGGTAAG

Downstream 100 bases:

>100_bases
TCAATTAGTATATACGTGTTGCTGTAGCTAAAATGTAATCCAAGCACCGAGGTCATTATTGGAAGTAAGCTATTATTAGG
AAGCGTAATGATGTCTATGG

Product: aminomethyl transferase family protein

Products: NA

Alternate protein names: Glycine Cleavage T-Protein; Aminomethyl Transferase Family Protein; Glycine Cleavage System T Protein Aminomethyltransferase; Aminomethyltransferase; Aminomethyltransferase Family Protein; Glycine Cleavage T-Protein C-Terminal Barrel; Aminomethyltransferase Related GcvT; GcvT-Like Aminomethyltransferase Protein; GcvT-Like Aminomethyltransferase

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MFLSQSRGVIKVSGADAAKFLHNITTNDVLQMESPSAVYNLILNSKGRFLFDFFLIKCDKHFLLDCEREAIMPIIELLRL
YRVVLKVKIKSCDEYSVALDTKQRLGDPGYTKTLEDGTIVFQDPRCVNMGVRYIVPHTSSVQYDMPTSQTNTEYSMLRMV
NTIPNCATDMVSGESFPLHFGLDKLNAISHTKGCYTGQEVVARMHRIGAKKTLRTVFSESGISLPQTGEIFVNQQCVGEM
ITSTENWGLCMLETSKLPTGYVDLSIGDIKLTLQS

Sequences:

>Translated_275_residues
MFLSQSRGVIKVSGADAAKFLHNITTNDVLQMESPSAVYNLILNSKGRFLFDFFLIKCDKHFLLDCEREAIMPIIELLRL
YRVVLKVKIKSCDEYSVALDTKQRLGDPGYTKTLEDGTIVFQDPRCVNMGVRYIVPHTSSVQYDMPTSQTNTEYSMLRMV
NTIPNCATDMVSGESFPLHFGLDKLNAISHTKGCYTGQEVVARMHRIGAKKTLRTVFSESGISLPQTGEIFVNQQCVGEM
ITSTENWGLCMLETSKLPTGYVDLSIGDIKLTLQS
>Mature_275_residues
MFLSQSRGVIKVSGADAAKFLHNITTNDVLQMESPSAVYNLILNSKGRFLFDFFLIKCDKHFLLDCEREAIMPIIELLRL
YRVVLKVKIKSCDEYSVALDTKQRLGDPGYTKTLEDGTIVFQDPRCVNMGVRYIVPHTSSVQYDMPTSQTNTEYSMLRMV
NTIPNCATDMVSGESFPLHFGLDKLNAISHTKGCYTGQEVVARMHRIGAKKTLRTVFSESGISLPQTGEIFVNQQCVGEM
ITSTENWGLCMLETSKLPTGYVDLSIGDIKLTLQS

Specific function: Unknown

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI58197556, Length=278, Percent_Identity=28.0575539568345, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71985951, Length=205, Percent_Identity=27.8048780487805, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24645123, Length=223, Percent_Identity=30.4932735426009, Blast_Score=102, Evalue=4e-22,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30790; Mature: 30790

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLSQSRGVIKVSGADAAKFLHNITTNDVLQMESPSAVYNLILNSKGRFLFDFFLIKCDK
CCCCCCCCEEEECCCHHHHHHHHCCCCCEEEECCCHHHHHHEECCCCCEEEEEEEHHCCC
HFLLDCEREAIMPIIELLRLYRVVLKVKIKSCDEYSVALDTKQRLGDPGYTKTLEDGTIV
CEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCCCCEEE
FQDPRCVNMGVRYIVPHTSSVQYDMPTSQTNTEYSMLRMVNTIPNCATDMVSGESFPLHF
EECCEEEECCEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCEEEE
GLDKLNAISHTKGCYTGQEVVARMHRIGAKKTLRTVFSESGISLPQTGEIFVNQQCVGEM
CHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCEEECHHHHHHH
ITSTENWGLCMLETSKLPTGYVDLSIGDIKLTLQS
HHCCCCCCEEEEECCCCCCCEEEEEECEEEEEEEC
>Mature Secondary Structure
MFLSQSRGVIKVSGADAAKFLHNITTNDVLQMESPSAVYNLILNSKGRFLFDFFLIKCDK
CCCCCCCCEEEECCCHHHHHHHHCCCCCEEEECCCHHHHHHEECCCCCEEEEEEEHHCCC
HFLLDCEREAIMPIIELLRLYRVVLKVKIKSCDEYSVALDTKQRLGDPGYTKTLEDGTIV
CEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCCCCEEE
FQDPRCVNMGVRYIVPHTSSVQYDMPTSQTNTEYSMLRMVNTIPNCATDMVSGESFPLHF
EECCEEEECCEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCEEEE
GLDKLNAISHTKGCYTGQEVVARMHRIGAKKTLRTVFSESGISLPQTGEIFVNQQCVGEM
CHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCEEECHHHHHHH
ITSTENWGLCMLETSKLPTGYVDLSIGDIKLTLQS
HHCCCCCCEEEEECCCCCCCEEEEEECEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA