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The map label for this gene is virD4 [H]

Identifier: 88607785

GI number: 88607785

Start: 1460198

End: 1462420

Strand: Reverse

Name: virD4 [H]

Synonym: APH_1402

Alternate gene names: 88607785

Gene position: 1462420-1460198 (Counterclockwise)

Preceding gene: 88607229

Following gene: 88607459

Centisome position: 99.4

GC content: 40.67

Gene sequence:

>2223_bases
ATGCATAGTTCCAATCATATACGAAATATTTTGGTATTCTTTTGTGGGCTGTTTTGCCTGTTGGAGTTTTGCTTTTATAT
TTCTGGCGTATTATTTGTGCTTCTTGTATGGGGAGTAGATTATTTAGATTTTAATGCAATAAACCCCAGTGTGTCAGATT
TTCCCATGCGGCTGTGGCCGACTATTTTTCAGTATATTAGTAAATGGTGGGGGGATCCCAAGCTGTTTGGAATTGCTAAT
TCGCTAAAGTTGTGGGGTTCATTTTTTGCTCCTATTGGTCTTGTTTGTCTTGTGGCGTGGAATCTTCGACATGTTCTTAT
TGATTGGCGACCTTTTAAGAAGAAAGAATCTTTACACGGAGATTCTCGGTGGGCTTCAGAGCGGGATATTAGAAAAATAG
GGTTACGCAGCAGACGTGGAATTTTATTAGGGAAAGATCAGAGGGGTTATTTGGTAGCAGATGGCTATCAACATGCTCTT
CTTTTTGCTCCAACTGGGTCTGGTAAAGGTGTAGGGTTTGTAATTCCCAATCTTTTATTCTGGGAAGATTCTGTAATTGT
GCATGATGTGAAGCTTGAAAACTACGACCTCACGAGTGGTTGGCGTAAGAAAATTGGGCAGGAAGTATATGTATGGAATC
CTGCGCAGCCAGATGGTATCAGTCATTGTTATAATCCGCTGGATTGGATAAGCAAAAAACCTGGGCAGATGGTAGATGAC
GTACAGAAGATTGCTAACCTTATCATGCCGGAGCAAGACTTTTGGTACAACGAAGCAAGGAGTTTATTTGTTGGGGTGGT
GCTCTATTTATTGGCAGTTCCGGAAAAGGTTAAGTCATTTGGCGAAGTTGTAAGAACAATGCGTAGCGATGACGTAGTAT
ATAACCTTGCGGTTGTATTGGACACGATAGGTAAGAAAATACACCCTGTTGCGTACATGAACATTGCTGCATTCTTGCAG
AAGGCGGATAAGGAACGTTCTGGTGTTATTTCTACCATGAACTCTTCTTTGGAATTGTGGGCTAACCCTCTTATTGATAC
TGCAACAGCTTCTAGTGATTTTAATATACAAGATTTCAAGAGGAAGCGTGTTTCTGTGTATGTTGGAGTTACACCTGATA
ATCTCACTAGGTTAAGGCCTTTGATGCAGGTTTTTTATCAACAGGCAACGGAGTTTTTATGTCGTACTCTACCTTCTGAT
GATGAACCTTATGGTGTATTGTTTTTGATGGATGAGTTTCCAACTCTTGGAAAGATGGAGCAGTTCCAGACGGGGATAGC
TTACTTTCGTGGGTACAGGGTAAGATTATTTTTGATAATACAAGATACAGAACAGTTAAAGGGAATATACGAAGAAGCAG
GGATGAACTCTTTCCTATCTAATTCTACTTACCGTATAACTTTTGCTGCAAACAACATAGAGACTGCAAACTTGATATCG
CAACTTATTGGAAATAAGACCGTGAGTCAGGAGTCTCTAAATAGGCCTAAGTTTTTAGACCTTAATCCTGCTTCACGCTC
ACTGCATATTTCTGATACACAGCGGGCGTTGTTGTTGCCTCAGGAAGTTATAATGTTACCTAAGGATGAGCAAATTCTCT
TAATTGAATCTACTTATCCGATAAAGTCTAGAAAAATAAAGTACTTTGAAGATAAAACGTTTACGCGTAGGCTATTGAAG
AGCACGTTTATTCCTACGCAAGAGCCGTACGATCCTGAAAAGATTCGTGGTGGAGTCGAGGGGGAAGCAGGTATTGTGTC
TGAGGCTTCGGAGAATAGTGAAGATCTAAAGGCGTTGATGGGTAGTTCTAGTGCAGAAAATCCTCCTGAGCGTGCTGAAT
ATGGATATGAAGATGATGGTGATCTTGTGGACAGAGAAGAATTTGAAGACCTATACGGTATAGGTGAAGAACCTGAAGAT
GATTTAGAGGACTTGGATGAGTCTGATGATTACTTTCACGACGAAGATGATGTTCTTAATGATGAAGACTACGACGATCC
TTATGAAGATGACATGGAGTTAGAAGGGGACGGAGATTGGGATGAGAATGAAGCTTTTGAGGATGAGCTTTTAGATGATG
AGGTTGTTGACGACGAGTTTGATAGCTTAGAGCCAGAGGAGGACGAAGACTTTGAAGAAGATGATTCTTTAGAAGAAGAG
GATGAATTTGGAGAAGATCGACCTACTGATGACAATGATAGCAGTAACGGAAGACTAAAGTAG

Upstream 100 bases:

>100_bases
CCATGTTTCAGACATTTTGTTCACTAAGTGTTCAGAGGGTAATAAGTAATCTGCGGTTATAATTACTTGTGAGCACTTTT
GTTTTGTAGTAGCGCTAGAT

Downstream 100 bases:

>100_bases
ATAGTTTTAGGTTTGTATTCTCTCAGTTATTTGATCAGGGTATGTGCTATTTGCAGTTTGTGAGTTAACGTGAGCACTTA
TTGTTTTTTAAGGATCTCTG

Product: type IV secretion system component VirD4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 740; Mature: 740

Protein sequence:

>740_residues
MHSSNHIRNILVFFCGLFCLLEFCFYISGVLFVLLVWGVDYLDFNAINPSVSDFPMRLWPTIFQYISKWWGDPKLFGIAN
SLKLWGSFFAPIGLVCLVAWNLRHVLIDWRPFKKKESLHGDSRWASERDIRKIGLRSRRGILLGKDQRGYLVADGYQHAL
LFAPTGSGKGVGFVIPNLLFWEDSVIVHDVKLENYDLTSGWRKKIGQEVYVWNPAQPDGISHCYNPLDWISKKPGQMVDD
VQKIANLIMPEQDFWYNEARSLFVGVVLYLLAVPEKVKSFGEVVRTMRSDDVVYNLAVVLDTIGKKIHPVAYMNIAAFLQ
KADKERSGVISTMNSSLELWANPLIDTATASSDFNIQDFKRKRVSVYVGVTPDNLTRLRPLMQVFYQQATEFLCRTLPSD
DEPYGVLFLMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLIS
QLIGNKTVSQESLNRPKFLDLNPASRSLHISDTQRALLLPQEVIMLPKDEQILLIESTYPIKSRKIKYFEDKTFTRRLLK
STFIPTQEPYDPEKIRGGVEGEAGIVSEASENSEDLKALMGSSSAENPPERAEYGYEDDGDLVDREEFEDLYGIGEEPED
DLEDLDESDDYFHDEDDVLNDEDYDDPYEDDMELEGDGDWDENEAFEDELLDDEVVDDEFDSLEPEEDEDFEEDDSLEEE
DEFGEDRPTDDNDSSNGRLK

Sequences:

>Translated_740_residues
MHSSNHIRNILVFFCGLFCLLEFCFYISGVLFVLLVWGVDYLDFNAINPSVSDFPMRLWPTIFQYISKWWGDPKLFGIAN
SLKLWGSFFAPIGLVCLVAWNLRHVLIDWRPFKKKESLHGDSRWASERDIRKIGLRSRRGILLGKDQRGYLVADGYQHAL
LFAPTGSGKGVGFVIPNLLFWEDSVIVHDVKLENYDLTSGWRKKIGQEVYVWNPAQPDGISHCYNPLDWISKKPGQMVDD
VQKIANLIMPEQDFWYNEARSLFVGVVLYLLAVPEKVKSFGEVVRTMRSDDVVYNLAVVLDTIGKKIHPVAYMNIAAFLQ
KADKERSGVISTMNSSLELWANPLIDTATASSDFNIQDFKRKRVSVYVGVTPDNLTRLRPLMQVFYQQATEFLCRTLPSD
DEPYGVLFLMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLIS
QLIGNKTVSQESLNRPKFLDLNPASRSLHISDTQRALLLPQEVIMLPKDEQILLIESTYPIKSRKIKYFEDKTFTRRLLK
STFIPTQEPYDPEKIRGGVEGEAGIVSEASENSEDLKALMGSSSAENPPERAEYGYEDDGDLVDREEFEDLYGIGEEPED
DLEDLDESDDYFHDEDDVLNDEDYDDPYEDDMELEGDGDWDENEAFEDELLDDEVVDDEFDSLEPEEDEDFEEDDSLEEE
DEFGEDRPTDDNDSSNGRLK
>Mature_740_residues
MHSSNHIRNILVFFCGLFCLLEFCFYISGVLFVLLVWGVDYLDFNAINPSVSDFPMRLWPTIFQYISKWWGDPKLFGIAN
SLKLWGSFFAPIGLVCLVAWNLRHVLIDWRPFKKKESLHGDSRWASERDIRKIGLRSRRGILLGKDQRGYLVADGYQHAL
LFAPTGSGKGVGFVIPNLLFWEDSVIVHDVKLENYDLTSGWRKKIGQEVYVWNPAQPDGISHCYNPLDWISKKPGQMVDD
VQKIANLIMPEQDFWYNEARSLFVGVVLYLLAVPEKVKSFGEVVRTMRSDDVVYNLAVVLDTIGKKIHPVAYMNIAAFLQ
KADKERSGVISTMNSSLELWANPLIDTATASSDFNIQDFKRKRVSVYVGVTPDNLTRLRPLMQVFYQQATEFLCRTLPSD
DEPYGVLFLMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLIS
QLIGNKTVSQESLNRPKFLDLNPASRSLHISDTQRALLLPQEVIMLPKDEQILLIESTYPIKSRKIKYFEDKTFTRRLLK
STFIPTQEPYDPEKIRGGVEGEAGIVSEASENSEDLKALMGSSSAENPPERAEYGYEDDGDLVDREEFEDLYGIGEEPED
DLEDLDESDDYFHDEDDVLNDEDYDDPYEDDMELEGDGDWDENEAFEDELLDDEVVDDEFDSLEPEEDEDFEEDDSLEEE
DEFGEDRPTDDNDSSNGRLK

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 84862; Mature: 84862

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSSNHIRNILVFFCGLFCLLEFCFYISGVLFVLLVWGVDYLDFNAINPSVSDFPMRLWP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHH
TIFQYISKWWGDPKLFGIANSLKLWGSFFAPIGLVCLVAWNLRHVLIDWRPFKKKESLHG
HHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHCCCC
DSRWASERDIRKIGLRSRRGILLGKDQRGYLVADGYQHALLFAPTGSGKGVGFVIPNLLF
CCCCCCHHHHHHHCCCCCCCEEEECCCCCEEEECCCCEEEEEEECCCCCCEEEECCCEEE
WEDSVIVHDVKLENYDLTSGWRKKIGQEVYVWNPAQPDGISHCYNPLDWISKKPGQMVDD
ECCCEEEEEEEECCCCCCHHHHHHCCCEEEEECCCCCCCHHHHCCCHHHHCCCCCHHHHH
VQKIANLIMPEQDFWYNEARSLFVGVVLYLLAVPEKVKSFGEVVRTMRSDDVVYNLAVVL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHH
DTIGKKIHPVAYMNIAAFLQKADKERSGVISTMNSSLELWANPLIDTATASSDFNIQDFK
HHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHCCHHHCCCCCCCCCHHHHC
RKRVSVYVGVTPDNLTRLRPLMQVFYQQATEFLCRTLPSDDEPYGVLFLMDEFPTLGKME
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHH
QFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLIS
HHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHCCHHHHCCCEEEEEEEECCCCHHHHHH
QLIGNKTVSQESLNRPKFLDLNPASRSLHISDTQRALLLPQEVIMLPKDEQILLIESTYP
HHHCCCCCCHHHCCCCCEEECCCCCCEEEECCCCHHHHCCHHHHCCCCCCEEEEEECCCC
IKSRKIKYFEDKTFTRRLLKSTFIPTQEPYDPEKIRGGVEGEAGIVSEASENSEDLKALM
CCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
GSSSAENPPERAEYGYEDDGDLVDREEFEDLYGIGEEPEDDLEDLDESDDYFHDEDDVLN
CCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCC
DEDYDDPYEDDMELEGDGDWDENEAFEDELLDDEVVDDEFDSLEPEEDEDFEEDDSLEEE
CCCCCCCCCCCCEECCCCCCCCCHHHHHHHCCCHHCCCHHHCCCCCCCCCCCCCCCCCCH
DEFGEDRPTDDNDSSNGRLK
HHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHSSNHIRNILVFFCGLFCLLEFCFYISGVLFVLLVWGVDYLDFNAINPSVSDFPMRLWP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHH
TIFQYISKWWGDPKLFGIANSLKLWGSFFAPIGLVCLVAWNLRHVLIDWRPFKKKESLHG
HHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHCCCC
DSRWASERDIRKIGLRSRRGILLGKDQRGYLVADGYQHALLFAPTGSGKGVGFVIPNLLF
CCCCCCHHHHHHHCCCCCCCEEEECCCCCEEEECCCCEEEEEEECCCCCCEEEECCCEEE
WEDSVIVHDVKLENYDLTSGWRKKIGQEVYVWNPAQPDGISHCYNPLDWISKKPGQMVDD
ECCCEEEEEEEECCCCCCHHHHHHCCCEEEEECCCCCCCHHHHCCCHHHHCCCCCHHHHH
VQKIANLIMPEQDFWYNEARSLFVGVVLYLLAVPEKVKSFGEVVRTMRSDDVVYNLAVVL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHH
DTIGKKIHPVAYMNIAAFLQKADKERSGVISTMNSSLELWANPLIDTATASSDFNIQDFK
HHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHCCHHHCCCCCCCCCHHHHC
RKRVSVYVGVTPDNLTRLRPLMQVFYQQATEFLCRTLPSDDEPYGVLFLMDEFPTLGKME
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHH
QFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLIS
HHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHCCHHHHCCCEEEEEEEECCCCHHHHHH
QLIGNKTVSQESLNRPKFLDLNPASRSLHISDTQRALLLPQEVIMLPKDEQILLIESTYP
HHHCCCCCCHHHCCCCCEEECCCCCCEEEECCCCHHHHCCHHHHCCCCCCEEEEEECCCC
IKSRKIKYFEDKTFTRRLLKSTFIPTQEPYDPEKIRGGVEGEAGIVSEASENSEDLKALM
CCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
GSSSAENPPERAEYGYEDDGDLVDREEFEDLYGIGEEPEDDLEDLDESDDYFHDEDDVLN
CCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCC
DEDYDDPYEDDMELEGDGDWDENEAFEDELLDDEVVDDEFDSLEPEEDEDFEEDDSLEEE
CCCCCCCCCCCCEECCCCCCCCCHHHHHHHCCCHHCCCHHHCCCCCCCCCCCCCCCCCCH
DEFGEDRPTDDNDSSNGRLK
HHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3185501 [H]