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The map label for this gene is omp85 [H]

Identifier: 88607567

GI number: 88607567

Start: 1277440

End: 1279758

Strand: Reverse

Name: omp85 [H]

Synonym: APH_1210

Alternate gene names: 88607567

Gene position: 1279758-1277440 (Counterclockwise)

Preceding gene: 88606695

Following gene: 88607800

Centisome position: 86.98

GC content: 41.53

Gene sequence:

>2319_bases
ATGAGATATTTTTTTGTTTTAGTCCTGATGGCAACGATGTTTGCCTCGGTGAGACCGGCGGTTGCAGATAGTGTGCAAAA
AGTACGTATAGAGGGAAATGAGAGGTTGGATAATGCGACCATTGAGTTCTATGCAAAAGTCGCTCTGCCGGAGGAGATAA
CACAGGGAAGATTGCATGAAATAATAAGTAACCTTTATGGGACGTCCTTATTCAAGAAGGTTGAAGTTGATATCGTAGAG
GATGAGCTTGTTATTAGCGTGGAAGAGAATCCTGTTGTGCGCAACGTCACAGTGAAGGGTAATCATGCTTTTAGTGCTAA
GACTTTGGCGGAAGATCTGCTGAAGTTAAAGAAGATGAGTATTTTTACGGAATCGAATTTAAATCAGGACTTAGGCAAGC
TGCATAGCTTGTATGTAAGCAGGGGTTACTTAAAAGCTAGCGTATCATATGTGATAAAGCCTGCTCCAAGGAACAGTGTT
GATGTGGAAGTGAAGATAGTAGAAGGGCCGCTTACTCGGATAGGTAATGTCAGGTTTGTCGGTAATACTGTATTCACTGA
ACTGGAGCTGCAAGAAGTAATTGCATCGAAGAGAAGGTCTTTGACTGATATTTTTGGCTTTTTTGGCGACAGTACGAAGT
TGTTTTCTGAAAGGCTAATGGTGGATCAGTCGCTTCTACGGGATTTTTACACCAGCAGAGGTTATTTAGATGTTAAGATT
GGTACGCCTTCCGTTGAAGTAACTTCAAAAGATTATTCTTATGCTACGGTGGTATTTTCGATAGAAGAGGGTAAGAAATA
TCGCTTTGGGGATTATATTGTAATAGTTGATGATGTTAAAACGTGGGAAGACGTTGAGCAGGAGCTAACTAACATAGTTC
TGACTAAGAAGGGTGAAGTTTTCAATATGAGTTTAGTTGAGAAGACGTCAACTTTGCTCACTGCGTTTTTAAATGAAAAA
GGTAAGCTCTTTGCGACTGTGAAGAATGATTACGATATTCATGGTGATGTTGTAAACGTAAAGTATAAGGTGTCTTTGGG
GCAGAGTGTCTATGTAAGGCGCATAAACATATTGGGTAATACTAGGACCTTGGATAGTGTGATCAGGCGTAAGCTTGGCG
TTTCTGAGGGAGATGTTTATAGTACGTTTGCTATGAGGCAATCTCGTAGAAGATTGTTGAATCTTGATTTCTTTGAATCT
GTTGATGCGGATACGCAGCGGATTAGCGATTCTGCTGTTGATATCAATTTTACAGTCAAGGAGCGTGGTACTGGGTCATT
TGATATCGGTGCGGGTTTTTCTCCTGCTAGTGGTTTGGTTGGGAAGATTAGTATAAAGGAGAGAAATTTATTAGGGACTG
GTAAGGTTATCTCTTTTGATTTAATGAGATCTCTTTCGGGTATGTCTAGTGTGCTCGATTTAGTCACTCCGGACATTTTT
GATAGTGAAGTGTCGTTTGGGGTAGGGGCGTTTTATTCTAGGCAAGGTGGTGTTCCGGCAAAAGGTTGGAAGGGATTGTT
TGCTACTGATGGTCCTTTTGGTAGTACTAACGCAGGGTTTTCTTCGCGCTTGTCGTGCAATCTGACTGATAGCTTGGCTG
CATCTGTGCAGTATTATTACAAGTATCACAGTATTCATAATATAGGCGAAGCTGCTTCTAAATTTATTAAGGAGCAGGAG
GGTACGTTCTTCGACTCTTCTGTGGGTTATTCTCTTGTTTATAGTAGTATAGACAATCCTTACAAGCCGCGTAGTGGTAT
ATATGCGAGGCTTAGTCAATCGGTTTCGGGTGTAGGTGGAAATCTGCATTACGTAAAGACAGAGGCGTCAAGTGCGCATT
TTTATCGCGTCTTTCAGCGCATTAACGATGATATAGTTTTGAAAATTAAGCCATCTTTTGGGTATGTTTTTGCGTATTCG
GGAGAGAAGGTGAAGATTGGACAGAGGTTTTTCCTTGGTAGTAATGAAATCAGAGGGTTCGCTTCTTCGGGTATAGGGCC
GAGAGATATCGCTACGCAAGAGGCGCTGGGTGGAAAGTTTTATTATGGTGTTATAACTCAGTTAGATTTTCCTGTAGGAT
TGCCTGAGCATTTGGGGATACTAGGTTCTTTGTTCTTCGATGTTGCGAGTTTGTCTGGGCTTGACTATAAGAAGGTTGAG
GGCTACAAGACTAGTGATTTGCTTAGAATGTCTGTTGGTTTTGGTTTCTCATGGAGATCGCCGTTTGGTCCTGTGAGGGT
CGACTTTGGATTCCCTATAGTGGCTGAGAAATTTGATGTGAAGGATATGCTTAGAATATCCACTGATTCGGGTATTTAG

Upstream 100 bases:

>100_bases
GGCATTGTAGTATAGTGATGGTCGTAGGGTTTATTCTTCTTGTATCTCTGATGGTTTTTGTAACCTTCAATGACGTCAAG
AGCATTTTGAAATGAGACAT

Downstream 100 bases:

>100_bases
TTATGAAGATTGTGAGAATTGTAGTATTGGCTTTAGCGCTAGTAGTTTTTTTGAATTGTTCTGTGGGTGTGAATGCCGCA
TCAGGAACGGAAGATAGGCC

Product: OMP85 family outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 772; Mature: 772

Protein sequence:

>772_residues
MRYFFVLVLMATMFASVRPAVADSVQKVRIEGNERLDNATIEFYAKVALPEEITQGRLHEIISNLYGTSLFKKVEVDIVE
DELVISVEENPVVRNVTVKGNHAFSAKTLAEDLLKLKKMSIFTESNLNQDLGKLHSLYVSRGYLKASVSYVIKPAPRNSV
DVEVKIVEGPLTRIGNVRFVGNTVFTELELQEVIASKRRSLTDIFGFFGDSTKLFSERLMVDQSLLRDFYTSRGYLDVKI
GTPSVEVTSKDYSYATVVFSIEEGKKYRFGDYIVIVDDVKTWEDVEQELTNIVLTKKGEVFNMSLVEKTSTLLTAFLNEK
GKLFATVKNDYDIHGDVVNVKYKVSLGQSVYVRRINILGNTRTLDSVIRRKLGVSEGDVYSTFAMRQSRRRLLNLDFFES
VDADTQRISDSAVDINFTVKERGTGSFDIGAGFSPASGLVGKISIKERNLLGTGKVISFDLMRSLSGMSSVLDLVTPDIF
DSEVSFGVGAFYSRQGGVPAKGWKGLFATDGPFGSTNAGFSSRLSCNLTDSLAASVQYYYKYHSIHNIGEAASKFIKEQE
GTFFDSSVGYSLVYSSIDNPYKPRSGIYARLSQSVSGVGGNLHYVKTEASSAHFYRVFQRINDDIVLKIKPSFGYVFAYS
GEKVKIGQRFFLGSNEIRGFASSGIGPRDIATQEALGGKFYYGVITQLDFPVGLPEHLGILGSLFFDVASLSGLDYKKVE
GYKTSDLLRMSVGFGFSWRSPFGPVRVDFGFPIVAEKFDVKDMLRISTDSGI

Sequences:

>Translated_772_residues
MRYFFVLVLMATMFASVRPAVADSVQKVRIEGNERLDNATIEFYAKVALPEEITQGRLHEIISNLYGTSLFKKVEVDIVE
DELVISVEENPVVRNVTVKGNHAFSAKTLAEDLLKLKKMSIFTESNLNQDLGKLHSLYVSRGYLKASVSYVIKPAPRNSV
DVEVKIVEGPLTRIGNVRFVGNTVFTELELQEVIASKRRSLTDIFGFFGDSTKLFSERLMVDQSLLRDFYTSRGYLDVKI
GTPSVEVTSKDYSYATVVFSIEEGKKYRFGDYIVIVDDVKTWEDVEQELTNIVLTKKGEVFNMSLVEKTSTLLTAFLNEK
GKLFATVKNDYDIHGDVVNVKYKVSLGQSVYVRRINILGNTRTLDSVIRRKLGVSEGDVYSTFAMRQSRRRLLNLDFFES
VDADTQRISDSAVDINFTVKERGTGSFDIGAGFSPASGLVGKISIKERNLLGTGKVISFDLMRSLSGMSSVLDLVTPDIF
DSEVSFGVGAFYSRQGGVPAKGWKGLFATDGPFGSTNAGFSSRLSCNLTDSLAASVQYYYKYHSIHNIGEAASKFIKEQE
GTFFDSSVGYSLVYSSIDNPYKPRSGIYARLSQSVSGVGGNLHYVKTEASSAHFYRVFQRINDDIVLKIKPSFGYVFAYS
GEKVKIGQRFFLGSNEIRGFASSGIGPRDIATQEALGGKFYYGVITQLDFPVGLPEHLGILGSLFFDVASLSGLDYKKVE
GYKTSDLLRMSVGFGFSWRSPFGPVRVDFGFPIVAEKFDVKDMLRISTDSGI
>Mature_772_residues
MRYFFVLVLMATMFASVRPAVADSVQKVRIEGNERLDNATIEFYAKVALPEEITQGRLHEIISNLYGTSLFKKVEVDIVE
DELVISVEENPVVRNVTVKGNHAFSAKTLAEDLLKLKKMSIFTESNLNQDLGKLHSLYVSRGYLKASVSYVIKPAPRNSV
DVEVKIVEGPLTRIGNVRFVGNTVFTELELQEVIASKRRSLTDIFGFFGDSTKLFSERLMVDQSLLRDFYTSRGYLDVKI
GTPSVEVTSKDYSYATVVFSIEEGKKYRFGDYIVIVDDVKTWEDVEQELTNIVLTKKGEVFNMSLVEKTSTLLTAFLNEK
GKLFATVKNDYDIHGDVVNVKYKVSLGQSVYVRRINILGNTRTLDSVIRRKLGVSEGDVYSTFAMRQSRRRLLNLDFFES
VDADTQRISDSAVDINFTVKERGTGSFDIGAGFSPASGLVGKISIKERNLLGTGKVISFDLMRSLSGMSSVLDLVTPDIF
DSEVSFGVGAFYSRQGGVPAKGWKGLFATDGPFGSTNAGFSSRLSCNLTDSLAASVQYYYKYHSIHNIGEAASKFIKEQE
GTFFDSSVGYSLVYSSIDNPYKPRSGIYARLSQSVSGVGGNLHYVKTEASSAHFYRVFQRINDDIVLKIKPSFGYVFAYS
GEKVKIGQRFFLGSNEIRGFASSGIGPRDIATQEALGGKFYYGVITQLDFPVGLPEHLGILGSLFFDVASLSGLDYKKVE
GYKTSDLLRMSVGFGFSWRSPFGPVRVDFGFPIVAEKFDVKDMLRISTDSGI

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Homo sapiens, GI225543166, Length=424, Percent_Identity=25.4716981132075, Blast_Score=84, Evalue=7e-16,
Organism=Escherichia coli, GI1786374, Length=822, Percent_Identity=26.5206812652068, Blast_Score=205, Evalue=7e-54,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 85707; Mature: 85707

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYFFVLVLMATMFASVRPAVADSVQKVRIEGNERLDNATIEFYAKVALPEEITQGRLHE
CHHHHHHHHHHHHHHHCCHHHHHCHHEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHH
IISNLYGTSLFKKVEVDIVEDELVISVEENPVVRNVTVKGNHAFSAKTLAEDLLKLKKMS
HHHHHHHHHHHHEEEEEEEECEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
IFTESNLNQDLGKLHSLYVSRGYLKASVSYVIKPAPRNSVDVEVKIVEGPLTRIGNVRFV
HEECCCCCHHHHHHHHHHHHCCHHEEEEEEEEECCCCCCCEEEEEEECCCHHHHCCEEEE
GNTVFTELELQEVIASKRRSLTDIFGFFGDSTKLFSERLMVDQSLLRDFYTSRGYLDVKI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
GTPSVEVTSKDYSYATVVFSIEEGKKYRFGDYIVIVDDVKTWEDVEQELTNIVLTKKGEV
CCCCEEEECCCCEEEEEEEEECCCCEEECCCEEEEEECCCCHHHHHHHHHHEEEECCCCE
FNMSLVEKTSTLLTAFLNEKGKLFATVKNDYDIHGDVVNVKYKVSLGQSVYVRRINILGN
EEEHHHHHHHHHHHHHHCCCCCEEEEECCCCEECCCEEEEEEEEECCCEEEEEEEEECCC
TRTLDSVIRRKLGVSEGDVYSTFAMRQSRRRLLNLDFFESVDADTQRISDSAVDINFTVK
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHHCCCCEEEEEEEEE
ERGTGSFDIGAGFSPASGLVGKISIKERNLLGTGKVISFDLMRSLSGMSSVLDLVTPDIF
ECCCCCEECCCCCCCCCCCEEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCC
DSEVSFGVGAFYSRQGGVPAKGWKGLFATDGPFGSTNAGFSSRLSCNLTDSLAASVQYYY
CCCCCCCCCHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHH
KYHSIHNIGEAASKFIKEQEGTFFDSSVGYSLVYSSIDNPYKPRSGIYARLSQSVSGVGG
HHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
NLHYVKTEASSAHFYRVFQRINDDIVLKIKPSFGYVFAYSGEKVKIGQRFFLGSNEIRGF
CEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCEEEEECCCEEEECCEEEECCCHHCHH
ASSGIGPRDIATQEALGGKFYYGVITQLDFPVGLPEHLGILGSLFFDVASLSGLDYKKVE
HCCCCCCHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCC
GYKTSDLLRMSVGFGFSWRSPFGPVRVDFGFPIVAEKFDVKDMLRISTDSGI
CCCCHHHEEEECCCCCCCCCCCCCEEEECCCCEEECCCCHHHHHEECCCCCC
>Mature Secondary Structure
MRYFFVLVLMATMFASVRPAVADSVQKVRIEGNERLDNATIEFYAKVALPEEITQGRLHE
CHHHHHHHHHHHHHHHCCHHHHHCHHEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHH
IISNLYGTSLFKKVEVDIVEDELVISVEENPVVRNVTVKGNHAFSAKTLAEDLLKLKKMS
HHHHHHHHHHHHEEEEEEEECEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
IFTESNLNQDLGKLHSLYVSRGYLKASVSYVIKPAPRNSVDVEVKIVEGPLTRIGNVRFV
HEECCCCCHHHHHHHHHHHHCCHHEEEEEEEEECCCCCCCEEEEEEECCCHHHHCCEEEE
GNTVFTELELQEVIASKRRSLTDIFGFFGDSTKLFSERLMVDQSLLRDFYTSRGYLDVKI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
GTPSVEVTSKDYSYATVVFSIEEGKKYRFGDYIVIVDDVKTWEDVEQELTNIVLTKKGEV
CCCCEEEECCCCEEEEEEEEECCCCEEECCCEEEEEECCCCHHHHHHHHHHEEEECCCCE
FNMSLVEKTSTLLTAFLNEKGKLFATVKNDYDIHGDVVNVKYKVSLGQSVYVRRINILGN
EEEHHHHHHHHHHHHHHCCCCCEEEEECCCCEECCCEEEEEEEEECCCEEEEEEEEECCC
TRTLDSVIRRKLGVSEGDVYSTFAMRQSRRRLLNLDFFESVDADTQRISDSAVDINFTVK
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHHCCCCEEEEEEEEE
ERGTGSFDIGAGFSPASGLVGKISIKERNLLGTGKVISFDLMRSLSGMSSVLDLVTPDIF
ECCCCCEECCCCCCCCCCCEEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCC
DSEVSFGVGAFYSRQGGVPAKGWKGLFATDGPFGSTNAGFSSRLSCNLTDSLAASVQYYY
CCCCCCCCCHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHH
KYHSIHNIGEAASKFIKEQEGTFFDSSVGYSLVYSSIDNPYKPRSGIYARLSQSVSGVGG
HHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
NLHYVKTEASSAHFYRVFQRINDDIVLKIKPSFGYVFAYSGEKVKIGQRFFLGSNEIRGF
CEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCEEEEECCCEEEECCEEEECCCHHCHH
ASSGIGPRDIATQEALGGKFYYGVITQLDFPVGLPEHLGILGSLFFDVASLSGLDYKKVE
HCCCCCCHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCC
GYKTSDLLRMSVGFGFSWRSPFGPVRVDFGFPIVAEKFDVKDMLRISTDSGI
CCCCHHHEEEECCCCCCCCCCCCCEEEECCCCEEECCCCHHHHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]