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The map label for this gene is msp5

Identifier: 88607263

GI number: 88607263

Start: 1113306

End: 1113935

Strand: Direct

Name: msp5

Synonym: APH_1049

Alternate gene names: NA

Gene position: 1113306-1113935 (Clockwise)

Preceding gene: 88606865

Following gene: 88607657

Centisome position: 75.67

GC content: 38.25

Gene sequence:

>630_bases
ATGAAGACTTTTAAGACTGTCTCTAACCTTCTTCTGCTAGTGGCAACTGTGTTTCTGGGGTATTCGTATGTTAACAAAAA
GGGAATATTCAGTGACATGGGTGCTAAATTAAGTAGTACTGACACTGTGGTTGAACAAGCGCCGATATTGGCTTCTTTTA
CTGATCTGATAAATCAAGAAGGTCAGGTTGTTAGTAGCACTGATTTTGCTGGGAAGCACATGTTGCTTATGTTCGGCTTT
TCTTCATGCAAGCACATATGTCCTGCGGAACTTGGTATGGTATCGCAACTTTTAAACAAGTTGGGTGAGACTGCTGATAA
ACTTCAAGCTGTTTTCATAACTATTGATCCCAAAAATGACACTGTTGAAAGGTTAAATGAGTATCACAAAGCCTTTGATA
GTCGAATTCAGATGCTGACTGGGGATGAGGAAGTTATTCGCAATGTAGTGAATAATTATAAGGTATACGTAGGTGAGTCT
GATAGTGAAGGAGATATTAATCACTCATCGTTTTTGTACTTGGTTGATGCCGACGGAAGATATGTAGGGCATTTTGCTCC
TGATTTTGATGAATACGAAAGTCAAGTAGGTAGACTTTTTGATTTCGTTAATAAGTACCTTAATTCTTAG

Upstream 100 bases:

>100_bases
GTTGCTTGACCTGTGTCAGCATAGGTGCTACGATGGCTTTCTATATCTTTGCCTACTAACCTGGGTGAAAGATTTTTGGA
TATTCGATGAGGCTTGATAG

Downstream 100 bases:

>100_bases
TTAGGGTTATGGTGTTATAGTCTTGTGTTAGCTTTGGTACAACCATGAGAATGGAGATTGTTCGCTTTGTATTTTTTTTA
GCGTGTGCGTTAATTTCCTT

Product: major surface protein 5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MKTFKTVSNLLLLVATVFLGYSYVNKKGIFSDMGAKLSSTDTVVEQAPILASFTDLINQEGQVVSSTDFAGKHMLLMFGF
SSCKHICPAELGMVSQLLNKLGETADKLQAVFITIDPKNDTVERLNEYHKAFDSRIQMLTGDEEVIRNVVNNYKVYVGES
DSEGDINHSSFLYLVDADGRYVGHFAPDFDEYESQVGRLFDFVNKYLNS

Sequences:

>Translated_209_residues
MKTFKTVSNLLLLVATVFLGYSYVNKKGIFSDMGAKLSSTDTVVEQAPILASFTDLINQEGQVVSSTDFAGKHMLLMFGF
SSCKHICPAELGMVSQLLNKLGETADKLQAVFITIDPKNDTVERLNEYHKAFDSRIQMLTGDEEVIRNVVNNYKVYVGES
DSEGDINHSSFLYLVDADGRYVGHFAPDFDEYESQVGRLFDFVNKYLNS
>Mature_209_residues
MKTFKTVSNLLLLVATVFLGYSYVNKKGIFSDMGAKLSSTDTVVEQAPILASFTDLINQEGQVVSSTDFAGKHMLLMFGF
SSCKHICPAELGMVSQLLNKLGETADKLQAVFITIDPKNDTVERLNEYHKAFDSRIQMLTGDEEVIRNVVNNYKVYVGES
DSEGDINHSSFLYLVDADGRYVGHFAPDFDEYESQVGRLFDFVNKYLNS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=145, Percent_Identity=31.7241379310345, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI281182727, Length=136, Percent_Identity=33.0882352941176, Blast_Score=88, Evalue=4e-18,
Organism=Homo sapiens, GI281182722, Length=136, Percent_Identity=33.0882352941176, Blast_Score=88, Evalue=4e-18,
Organism=Homo sapiens, GI281182716, Length=136, Percent_Identity=33.0882352941176, Blast_Score=88, Evalue=4e-18,
Organism=Homo sapiens, GI153791313, Length=136, Percent_Identity=33.0882352941176, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17531419, Length=140, Percent_Identity=27.8571428571429, Blast_Score=81, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6319498, Length=194, Percent_Identity=28.8659793814433, Blast_Score=86, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6319511, Length=168, Percent_Identity=30.952380952381, Blast_Score=83, Evalue=3e-17,
Organism=Drosophila melanogaster, GI19920710, Length=163, Percent_Identity=32.5153374233129, Blast_Score=100, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23357; Mature: 23357

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTFKTVSNLLLLVATVFLGYSYVNKKGIFSDMGAKLSSTDTVVEQAPILASFTDLINQE
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
GQVVSSTDFAGKHMLLMFGFSSCKHICPAELGMVSQLLNKLGETADKLQAVFITIDPKND
CCEEECCCCCCCHHHEEECHHHHCCCCHHHHHHHHHHHHHHCCHHHHHEEEEEEECCCCC
TVERLNEYHKAFDSRIQMLTGDEEVIRNVVNNYKVYVGESDSEGDINHSSFLYLVDADGR
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEEECCCCC
YVGHFAPDFDEYESQVGRLFDFVNKYLNS
EECCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTFKTVSNLLLLVATVFLGYSYVNKKGIFSDMGAKLSSTDTVVEQAPILASFTDLINQE
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
GQVVSSTDFAGKHMLLMFGFSSCKHICPAELGMVSQLLNKLGETADKLQAVFITIDPKND
CCEEECCCCCCCHHHEEECHHHHCCCCHHHHHHHHHHHHHHCCHHHHHEEEEEEECCCCC
TVERLNEYHKAFDSRIQMLTGDEEVIRNVVNNYKVYVGESDSEGDINHSSFLYLVDADGR
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEEECCCCC
YVGHFAPDFDEYESQVGRLFDFVNKYLNS
EECCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA