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The map label for this gene is p44-12 [H]

Identifier: 88607202

GI number: 88607202

Start: 1320893

End: 1322068

Strand: Reverse

Name: p44-12 [H]

Synonym: APH_1249

Alternate gene names: 88607202

Gene position: 1322068-1320893 (Counterclockwise)

Preceding gene: 88607614

Following gene: 88607296

Centisome position: 89.86

GC content: 46.34

Gene sequence:

>1176_bases
ATGATGTCTATGGCTATAGTCATGGCTGGGAATGATGTCAGGGCTCATGATGACGTTAGCGCTTTGGAGACTGGTGGTGC
GGGATATTTCTATGTTGGCTTGGATTACAGTCCAGCGTTTAGCAAGATAAGAGATTTTAGTATAAGGGAGAGTAACGGAG
AGACTAAGGCAGTATATCCATACTTAAAGGATGGAAAGAGTGTAAAGCTAGAGTCACACAAGTTTGACTGGAACACTCCT
GATCCTCGGATTGGGTTTAAGGACAACATGCTTGTAGCTATGGAAGGCAGTGTTGGTTATGGTATTGGTGGTGCCAGGGT
TGAGCTTGAGATTGGTTACGAGCGCTTCAAGACCAAGGGTATTAGAGATAGTGGTAGTAAGGAAGATGAAGCTGATACAG
TATATCTACTAGCTAAGGAGTTAGCTTATGATGTTGTTACTGGGCAGACTGATAACCTTGCTGCTGCTCTTGCCAAGACC
TCTGGTAAAGATATTGTTCAGTTTGCTAAGGCGGTTGGGGTTTCTCATCCCGGTATTGATAAGAAGGTTTGTGATGGGGG
TCATGCACGGGGAAAAAAGAGTGGAGATAATGGCTCGCTGGCCGACTATACGGATGGTGGCGCGTCACAGACGAATAAGA
CGGCTCAGTGTAGTGGTATGGGAACCGGCAAAGCCGGCAAGAGAGGATTGGGCTTGACTGAGTTTGTTAACAAAACAAAG
GTTGGAGAAGGTAAGAATTGGCCAACGGGGTACGTTAATGATGGCGACAACGTTAATGTGCTCGGCGATACGAATGGTAA
CGCCGAAGCCGTAGCTAAAGACCTAGTACAGGAGCTAACCCCTGAAGAAAAAACCATAGTAGCAGGGTTACTAGCTAAGA
CTATTGAAGGGGGTGAAGTTGTTGAGATCAGGGCGGTTTCTTCTACTTCCGTAATGGTCAATGCTTGTTATGATCTTCTT
AGTGAAGGTTTAGGTGTTGTTCCTTATGCTTGTGTTGGTCTTGGCGGTAACTTCGTGGGCGTGGTTGATGGCCATATCAC
TCCTAAGCTTGCTTATAGATTAAAGGCTGGGTTGAGTTATCAGCTCTCTCCTGTAATCTCCGCTTTTGCGGGTGGATTCT
ACCATCGCGTTGTGGGAGATGGCGTTTATGATGATCTGCCGGCTCAACTACCTTGA

Upstream 100 bases:

>100_bases
CTTTCAGTTTCGAAAACATTAGTGAATGTTCTCTCAAAGCTGAAAACCAAATCTAGATACCGCGGTTATTATTGGACGTA
AGCTATTATTAGGAAGCGTA

Downstream 100 bases:

>100_bases
ATAGCTAGGTATATCAAGATCCTAAGCAATAACTCTTATTATTAAAAGGAAGACCAAGGGTATTAGAGATAGTGGTAGTA
AGGAAGATGAAGCTGATACA

Product: P44-12 outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MMSMAIVMAGNDVRAHDDVSALETGGAGYFYVGLDYSPAFSKIRDFSIRESNGETKAVYPYLKDGKSVKLESHKFDWNTP
DPRIGFKDNMLVAMEGSVGYGIGGARVELEIGYERFKTKGIRDSGSKEDEADTVYLLAKELAYDVVTGQTDNLAAALAKT
SGKDIVQFAKAVGVSHPGIDKKVCDGGHARGKKSGDNGSLADYTDGGASQTNKTAQCSGMGTGKAGKRGLGLTEFVNKTK
VGEGKNWPTGYVNDGDNVNVLGDTNGNAEAVAKDLVQELTPEEKTIVAGLLAKTIEGGEVVEIRAVSSTSVMVNACYDLL
SEGLGVVPYACVGLGGNFVGVVDGHITPKLAYRLKAGLSYQLSPVISAFAGGFYHRVVGDGVYDDLPAQLP

Sequences:

>Translated_391_residues
MMSMAIVMAGNDVRAHDDVSALETGGAGYFYVGLDYSPAFSKIRDFSIRESNGETKAVYPYLKDGKSVKLESHKFDWNTP
DPRIGFKDNMLVAMEGSVGYGIGGARVELEIGYERFKTKGIRDSGSKEDEADTVYLLAKELAYDVVTGQTDNLAAALAKT
SGKDIVQFAKAVGVSHPGIDKKVCDGGHARGKKSGDNGSLADYTDGGASQTNKTAQCSGMGTGKAGKRGLGLTEFVNKTK
VGEGKNWPTGYVNDGDNVNVLGDTNGNAEAVAKDLVQELTPEEKTIVAGLLAKTIEGGEVVEIRAVSSTSVMVNACYDLL
SEGLGVVPYACVGLGGNFVGVVDGHITPKLAYRLKAGLSYQLSPVISAFAGGFYHRVVGDGVYDDLPAQLP
>Mature_391_residues
MMSMAIVMAGNDVRAHDDVSALETGGAGYFYVGLDYSPAFSKIRDFSIRESNGETKAVYPYLKDGKSVKLESHKFDWNTP
DPRIGFKDNMLVAMEGSVGYGIGGARVELEIGYERFKTKGIRDSGSKEDEADTVYLLAKELAYDVVTGQTDNLAAALAKT
SGKDIVQFAKAVGVSHPGIDKKVCDGGHARGKKSGDNGSLADYTDGGASQTNKTAQCSGMGTGKAGKRGLGLTEFVNKTK
VGEGKNWPTGYVNDGDNVNVLGDTNGNAEAVAKDLVQELTPEEKTIVAGLLAKTIEGGEVVEIRAVSSTSVMVNACYDLL
SEGLGVVPYACVGLGGNFVGVVDGHITPKLAYRLKAGLSYQLSPVISAFAGGFYHRVVGDGVYDDLPAQLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 41182; Mature: 41182

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSMAIVMAGNDVRAHDDVSALETGGAGYFYVGLDYSPAFSKIRDFSIRESNGETKAVYP
CCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEEECCCHHHHHHHCCEEECCCCCEEEEEE
YLKDGKSVKLESHKFDWNTPDPRIGFKDNMLVAMEGSVGYGIGGARVELEIGYERFKTKG
EECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECHHHHHCCC
IRDSGSKEDEADTVYLLAKELAYDVVTGQTDNLAAALAKTSGKDIVQFAKAVGVSHPGID
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCC
KKVCDGGHARGKKSGDNGSLADYTDGGASQTNKTAQCSGMGTGKAGKRGLGLTEFVNKTK
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHC
VGEGKNWPTGYVNDGDNVNVLGDTNGNAEAVAKDLVQELTPEEKTIVAGLLAKTIEGGEV
CCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCE
VEIRAVSSTSVMVNACYDLLSEGLGVVPYACVGLGGNFVGVVDGHITPKLAYRLKAGLSY
EEEEEECCCHHHHHHHHHHHHCCCCCCCHHEEECCCCEEEEECCCCCHHHHHHHHCCCCE
QLSPVISAFAGGFYHRVVGDGVYDDLPAQLP
EHHHHHHHHHCCHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MMSMAIVMAGNDVRAHDDVSALETGGAGYFYVGLDYSPAFSKIRDFSIRESNGETKAVYP
CCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEEECCCHHHHHHHCCEEECCCCCEEEEEE
YLKDGKSVKLESHKFDWNTPDPRIGFKDNMLVAMEGSVGYGIGGARVELEIGYERFKTKG
EECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECHHHHHCCC
IRDSGSKEDEADTVYLLAKELAYDVVTGQTDNLAAALAKTSGKDIVQFAKAVGVSHPGID
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCC
KKVCDGGHARGKKSGDNGSLADYTDGGASQTNKTAQCSGMGTGKAGKRGLGLTEFVNKTK
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHC
VGEGKNWPTGYVNDGDNVNVLGDTNGNAEAVAKDLVQELTPEEKTIVAGLLAKTIEGGEV
CCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCE
VEIRAVSSTSVMVNACYDLLSEGLGVVPYACVGLGGNFVGVVDGHITPKLAYRLKAGLSY
EEEEEECCCHHHHHHHHHHHHCCCCCCCHHEEECCCCEEEEECCCCCHHHHHHHHCCCCE
QLSPVISAFAGGFYHRVVGDGVYDDLPAQLP
EHHHHHHHHHCCHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]