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The map label for this gene is recJ [H]

Identifier: 88607079

GI number: 88607079

Start: 1230202

End: 1231959

Strand: Reverse

Name: recJ [H]

Synonym: APH_1165

Alternate gene names: 88607079

Gene position: 1231959-1230202 (Counterclockwise)

Preceding gene: 88606810

Following gene: 88607641

Centisome position: 83.73

GC content: 41.98

Gene sequence:

>1758_bases
ATGCTACAAAGCTCAGCAGAAGAAGCAGTCTTATGTACGGGAGTAAGTGGAGCCGTATGGAAGGTGCATAACGCTACATA
TAGGGATGTACTCACGATAAAGCAGAAGTTCGGACTTTCTGAAATCGTAGCGCATGTCTTAGCTATAAAACGCATACCTC
TAGATGATATTAGAGATTTCTTGTTTCCCACTTTAAAGCTGCTTCTGCCGGATCCCTTCCATCTGTTGGATATGGGAAAG
GCTGTTGATAGGATATTAAAAGCCATTTATGAGAAAGAAAGAATAGTAATTTTTGGTGACTATGATGTTGATGGGGCGAC
CTCTTCGGCAATGCTCAAGAGGTATTTCAAAAGCATAGGAGCTACTGCGGAAGTTTACATTCCCGATCGCTTAAAAGAGG
GGTATGGACCAAATCCAGAAGCTCTAATAAAACTTAGAAAGAAGGGATGTAGTTTATGTATCACAGTAGATTGCGGTACT
GTTGCGCATGAACCAATATCAGTTGCTAGGGCTGCGGGATTAGATGTAATTGTTGTGGACCACCACATAGGGTCTCCCAC
ATTACCGGATGCGACGGCCATTATAAATCCCAATCGCCTTGATGAGACGTCGACTTACACGTATTTGTCGGGTGTAGGGA
CTTCCTTTATGTTGTTGATTGCATTGAATAAGACTCTGAGACAAGCAGGGTATTTTCAGCAAGAAAATGAGCCAAATTTA
ATGAATTATTTGGACTTGGTAGCTCTTGGTACTGTTTGTGATGTCATGCCAATGCTCAAGTTAAACAGGGCATTTGTAAA
ACAGGGACTAAAAGTGATGTCAGAACGAGGAAATATGGGGCTTAGAACTCTTGCCGATGCGATAGGTATTGAAGAAAAGC
CTAGTGTTTATCATCTCGGTTTTTGCATAGGTCCCCACATCAATGCAGGAGGCAGAATCGGGAATTCAAGCTTAGGGGCG
CGGCTTTTATCAAGCAATGATGCTATTGAGTGTAATAAAATTGTCACGATGTTGCTTGATTTGAATAATGAGAGAAAAGA
AATAGAGAATAGAAGCCTTGCTGAAGCACTGGCGCAGGCAGAACTCCTTGTTGATGAAGGTAAGAATATCATCATGGTCA
CAGGAAATTGGCATGTTGGGGTTATAGGAATCATTGCTGGTCGCATAAAAGAACGTTTTTTCTTACCAACAATTGTAATT
TCTCTAGATGGGGACATGGGGAAAGCTAGCGCGCGTTCTGTAGCGGGTATTGACATAGGGGCTGCTGTTCTATCCGCTAA
GTTTGAAAAACTAATTCCTGAAGGTGGTGGACATGAAATGGCTGCAGGATTTTCCGTGCATAGAAGCCAGATCGAGCCAC
TATATAAGTTCTTTTTAGAGAGATTTAAAGATGTAAATATACAAAAGGCTTTACATGCGAGTGGTATTTTATCAACTGCG
GGCATTTCTTCCGCGTTGTGCAGAGAATTGCAATTATTAGAACCGTTCGGGCCTGGAAACCCGGAACCGAAATTTGTACT
CAGAAATGTTCGTATAAAAAATCCCGCTATTATAGGAGAAAGTCACATAAAATGCTTAATTGACGACGGCAGCGGTGCTT
CTGTGCGGGGAATGTGCTTTAAATGTGTAGGAACAGAACTAGCTCTAGGGTTACTACAGGGAGGCATAGCTGTACATTTA
CTTGGCAAAGTCAGCATGAATCAATGGCGGGGTAATGAATATGTACAGTTTATAATAGATGACCTTGCGTTTGCGTAA

Upstream 100 bases:

>100_bases
TGAGCGAGTTATGGGGTGTTGCTTCTTATAATAAATAATCATTGCTTCTGAGGGGTAGTGTGCACAAAATTGACGGCCTA
TATTAGGAATTTGGTGCAGT

Downstream 100 bases:

>100_bases
AAAAGTGAGAGTTTTTTCCTTATTATTCCACGTCAGAGCTCTTGATAATGTGAGTAGCGAGCGTGTAGTGCTCATTTTTT
GAAGACAAGCATGATTCTTA

Product: single-stranded-DNA-specific exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 585; Mature: 585

Protein sequence:

>585_residues
MLQSSAEEAVLCTGVSGAVWKVHNATYRDVLTIKQKFGLSEIVAHVLAIKRIPLDDIRDFLFPTLKLLLPDPFHLLDMGK
AVDRILKAIYEKERIVIFGDYDVDGATSSAMLKRYFKSIGATAEVYIPDRLKEGYGPNPEALIKLRKKGCSLCITVDCGT
VAHEPISVARAAGLDVIVVDHHIGSPTLPDATAIINPNRLDETSTYTYLSGVGTSFMLLIALNKTLRQAGYFQQENEPNL
MNYLDLVALGTVCDVMPMLKLNRAFVKQGLKVMSERGNMGLRTLADAIGIEEKPSVYHLGFCIGPHINAGGRIGNSSLGA
RLLSSNDAIECNKIVTMLLDLNNERKEIENRSLAEALAQAELLVDEGKNIIMVTGNWHVGVIGIIAGRIKERFFLPTIVI
SLDGDMGKASARSVAGIDIGAAVLSAKFEKLIPEGGGHEMAAGFSVHRSQIEPLYKFFLERFKDVNIQKALHASGILSTA
GISSALCRELQLLEPFGPGNPEPKFVLRNVRIKNPAIIGESHIKCLIDDGSGASVRGMCFKCVGTELALGLLQGGIAVHL
LGKVSMNQWRGNEYVQFIIDDLAFA

Sequences:

>Translated_585_residues
MLQSSAEEAVLCTGVSGAVWKVHNATYRDVLTIKQKFGLSEIVAHVLAIKRIPLDDIRDFLFPTLKLLLPDPFHLLDMGK
AVDRILKAIYEKERIVIFGDYDVDGATSSAMLKRYFKSIGATAEVYIPDRLKEGYGPNPEALIKLRKKGCSLCITVDCGT
VAHEPISVARAAGLDVIVVDHHIGSPTLPDATAIINPNRLDETSTYTYLSGVGTSFMLLIALNKTLRQAGYFQQENEPNL
MNYLDLVALGTVCDVMPMLKLNRAFVKQGLKVMSERGNMGLRTLADAIGIEEKPSVYHLGFCIGPHINAGGRIGNSSLGA
RLLSSNDAIECNKIVTMLLDLNNERKEIENRSLAEALAQAELLVDEGKNIIMVTGNWHVGVIGIIAGRIKERFFLPTIVI
SLDGDMGKASARSVAGIDIGAAVLSAKFEKLIPEGGGHEMAAGFSVHRSQIEPLYKFFLERFKDVNIQKALHASGILSTA
GISSALCRELQLLEPFGPGNPEPKFVLRNVRIKNPAIIGESHIKCLIDDGSGASVRGMCFKCVGTELALGLLQGGIAVHL
LGKVSMNQWRGNEYVQFIIDDLAFA
>Mature_585_residues
MLQSSAEEAVLCTGVSGAVWKVHNATYRDVLTIKQKFGLSEIVAHVLAIKRIPLDDIRDFLFPTLKLLLPDPFHLLDMGK
AVDRILKAIYEKERIVIFGDYDVDGATSSAMLKRYFKSIGATAEVYIPDRLKEGYGPNPEALIKLRKKGCSLCITVDCGT
VAHEPISVARAAGLDVIVVDHHIGSPTLPDATAIINPNRLDETSTYTYLSGVGTSFMLLIALNKTLRQAGYFQQENEPNL
MNYLDLVALGTVCDVMPMLKLNRAFVKQGLKVMSERGNMGLRTLADAIGIEEKPSVYHLGFCIGPHINAGGRIGNSSLGA
RLLSSNDAIECNKIVTMLLDLNNERKEIENRSLAEALAQAELLVDEGKNIIMVTGNWHVGVIGIIAGRIKERFFLPTIVI
SLDGDMGKASARSVAGIDIGAAVLSAKFEKLIPEGGGHEMAAGFSVHRSQIEPLYKFFLERFKDVNIQKALHASGILSTA
GISSALCRELQLLEPFGPGNPEPKFVLRNVRIKNPAIIGESHIKCLIDDGSGASVRGMCFKCVGTELALGLLQGGIAVHL
LGKVSMNQWRGNEYVQFIIDDLAFA

Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=525, Percent_Identity=35.6190476190476, Blast_Score=280, Evalue=2e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610
- InterPro:   IPR018779 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 63593; Mature: 63593

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQSSAEEAVLCTGVSGAVWKVHNATYRDVLTIKQKFGLSEIVAHVLAIKRIPLDDIRDF
CCCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHH
LFPTLKLLLPDPFHLLDMGKAVDRILKAIYEKERIVIFGDYDVDGATSSAMLKRYFKSIG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
ATAEVYIPDRLKEGYGPNPEALIKLRKKGCSLCITVDCGTVAHEPISVARAAGLDVIVVD
CEEEEEECHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCCEEEEEE
HHIGSPTLPDATAIINPNRLDETSTYTYLSGVGTSFMLLIALNKTLRQAGYFQQENEPNL
CCCCCCCCCCCEEEECCCCCCCCCCEEEHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCH
MNYLDLVALGTVCDVMPMLKLNRAFVKQGLKVMSERGNMGLRTLADAIGIEEKPSVYHLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEE
FCIGPHINAGGRIGNSSLGARLLSSNDAIECNKIVTMLLDLNNERKEIENRSLAEALAQA
EEECCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ELLVDEGKNIIMVTGNWHVGVIGIIAGRIKERFFLPTIVISLDGDMGKASARSVAGIDIG
HHHHCCCCEEEEEECCCCEEHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCCCCHHH
AAVLSAKFEKLIPEGGGHEMAAGFSVHRSQIEPLYKFFLERFKDVNIQKALHASGILSTA
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHC
GISSALCRELQLLEPFGPGNPEPKFVLRNVRIKNPAIIGESHIKCLIDDGSGASVRGMCF
CHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCEEECCCCEEEEEECCCCCCCHHHHH
KCVGTELALGLLQGGIAVHLLGKVSMNQWRGNEYVQFIIDDLAFA
HHHHHHHHHHHHHCCEEEEEEEHHHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MLQSSAEEAVLCTGVSGAVWKVHNATYRDVLTIKQKFGLSEIVAHVLAIKRIPLDDIRDF
CCCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHH
LFPTLKLLLPDPFHLLDMGKAVDRILKAIYEKERIVIFGDYDVDGATSSAMLKRYFKSIG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
ATAEVYIPDRLKEGYGPNPEALIKLRKKGCSLCITVDCGTVAHEPISVARAAGLDVIVVD
CEEEEEECHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCCEEEEEE
HHIGSPTLPDATAIINPNRLDETSTYTYLSGVGTSFMLLIALNKTLRQAGYFQQENEPNL
CCCCCCCCCCCEEEECCCCCCCCCCEEEHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCH
MNYLDLVALGTVCDVMPMLKLNRAFVKQGLKVMSERGNMGLRTLADAIGIEEKPSVYHLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEE
FCIGPHINAGGRIGNSSLGARLLSSNDAIECNKIVTMLLDLNNERKEIENRSLAEALAQA
EEECCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ELLVDEGKNIIMVTGNWHVGVIGIIAGRIKERFFLPTIVISLDGDMGKASARSVAGIDIG
HHHHCCCCEEEEEECCCCEEHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCCCCHHH
AAVLSAKFEKLIPEGGGHEMAAGFSVHRSQIEPLYKFFLERFKDVNIQKALHASGILSTA
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHC
GISSALCRELQLLEPFGPGNPEPKFVLRNVRIKNPAIIGESHIKCLIDDGSGASVRGMCF
CHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCEEECCCCEEEEEECCCCCCCHHHHH
KCVGTELALGLLQGGIAVHLLGKVSMNQWRGNEYVQFIIDDLAFA
HHHHHHHHHHHHHCCEEEEEEEHHHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]