Click here to switch to the map view.

The map label for this gene is ymfN [H]

Identifier: 88195871

GI number: 88195871

Start: 2055385

End: 2057079

Strand: Reverse

Name: ymfN [H]

Synonym: SAOUHSC_02196

Alternate gene names: 88195871

Gene position: 2057079-2055385 (Counterclockwise)

Preceding gene: 88195872

Following gene: 88195870

Centisome position: 72.91

GC content: 34.28

Gene sequence:

>1695_bases
ATGACTGATTATGTTACTAAATACGCAAAAAAGGTAGTTTCAGGAGAAATTTTGGCAAGTTTGAAGAATATTCAAGTATG
TAAACGTCACCTATCTTTTATGGAGAACCCGCCGAATGGTTGCCATTGGGATAATCATTTGTCTAACAAAGCAATTAAAT
TTGTGGAAATGCTTCCAGACCCTAAAACAAACCAGCCCATGCCTCTTATGGAGTTTCAGAAATTCATTGTTGGGAGCTTA
TACGGCTGGCGTAGAGGTCAATACAGAATGTTTACTAAAGCTTATATAAGTATGGCTAGAAAACAAGGTAAGTCTCTAAT
CGTATCGGGAATGTCCGTTAACGAACTGTTGTTTGGACAATACCCTAAATTTAATAGACAAATTTATGTAGCTTCATCTA
CTTATAAGCAAGCGCAAACAATATTCAAGATGGCAAGCCAACAAGTAAACCTAATGCGAAGTAAAAGCAAGTTTATCCGT
GAAAAAACAGACGTAAGAAAGACAGACATTGAAGATGTATTAAGTAGTTCAGTGTTTGCACCTCTTTCCAATAACCCAGA
TGCGGTTGATGGTAAAGATCCTACAGTTGCTATTTTGGACGAATTGGCAAGTATGCCTGATGATGAGATGTACTCAAGGT
TTAAAACAGGTATGACATTACAAAAAAATCCTTTAACCCTACTTGTTTCAACGGCCGGAGACAATTTAAATAGTCAAATG
TACCAAGAGTATAAGTATATTAAACGTATTTTAAATGAAGAAGTAAGAGCTGATAATTACTTTGTATATTGTGCTGAAAT
GGATTCACAAGAAGAAGTTCAAGATGAAACAAAGTGGATTAAAGCAATGCCGCTTTTAGAATCAAAAGAACATAGAAAAA
CTATACTTCAAAATGTAAAAGCTGATATACAAGACGAATTAGAAAAAGGGACATCATATCATAAGATTTTGATTAAAAAC
TTCAATTTATGGCAAGCGCAAAGAGAAGATAGCTTGCTAGATATTTCAGATTGGGAACAAGTAATAACGCCTATGCCTAA
TATCAATGGTAAAGATGTGTATATAGGTGTCGACTTATCGAGATTGGATGACTTAACATCTGTAGGGTTTATTTTCCCTA
ACGACGATAAAAAAGTGTTTTTACATAGTCATTCTTTCATTGGATTAAGAACAAACTTAGAACAAAAATCTAAGAGAGAC
AAAATAAATTATGAATTAGCGATTGAACGTGGCGAAGCTGAGACTACACAATCAGATAGCGGCATGATTGATTATAAACA
AGTTATCGATTTTATAGTGAAATTTATAACGACGCATGACCTGAATGTACAGGCTGTTTGCTATGACCCTTGGAATGCGC
AAAGTTTTATAACAACAATCGAATCAATGGCTTTAGATTGGCCACTCATTGAAGTGGGACAAAGTTTTAAGGCGTTATCA
CAATCTATTAAAGAATTTAGAATGTGGGTTGCAGATGAAAGAATACAGCATAACGATAATATGTTACTTACAACATCAGT
TAATAATGCCGTTTTGATTCGTGACGGAGAAGACAATGTGAAAATAAATAAAAAAATGAATCGTCAAAAAATAGATCCGA
TTATTTCGATTATCACAGCTTTCACTGAAGCTAGAATGCACGAATTCCAAGAAAATTGGACGGAGAAATATGAAAGCGAA
GAATTCGGATTTTAA

Upstream 100 bases:

>100_bases
CTAATACTTTAGGATTAACTATTGATAGCCGATTGCGTATTATGGTTCCTGATGAAAAAGAAGATGATGATCCATATATG
GAATTTGTGAGTGATTAGTA

Downstream 100 bases:

>100_bases
AGGTGGTGACAAAATGGACTTGAATAAAATAAATGTCTTTTTTAATTTCTTGGTTGCTAATTTGGTTAGCATCCTTTTTT
TATTAGGTTTGTTTGTGGTT

Product: phage terminase large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 564; Mature: 563

Protein sequence:

>564_residues
MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPKTNQPMPLMEFQKFIVGSL
YGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIR
EKTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM
YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKN
FNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRD
KINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS
QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMHEFQENWTEKYESE
EFGF

Sequences:

>Translated_564_residues
MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPKTNQPMPLMEFQKFIVGSL
YGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIR
EKTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM
YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKN
FNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRD
KINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS
QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMHEFQENWTEKYESE
EFGF
>Mature_563_residues
TDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPKTNQPMPLMEFQKFIVGSLY
GWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIRE
KTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMY
QEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNF
NLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDK
INYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQ
SIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMHEFQENWTEKYESEE
FGF

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 65291; Mature: 65160

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ
CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCC
YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA
CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEC
PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM
CCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCEEECCCCEEEEECCCCCCHHHH
YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK
HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS
HHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECHH
RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS
HHHHHHHCCEEEECCCCEEEEECCCEEEEECCCHHHHHHCCCCEEEEEECCCCCCCCCCC
GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS
CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA
HHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCEEECCHHCHHHHHHHHHHHHH
FTEARMHEFQENWTEKYESEEFGF
HHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TDYVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
PKTNQPMPLMEFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ
CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCC
YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA
CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEC
PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQM
CCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCEEECCCCEEEEECCCCCCHHHH
YQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK
HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS
HHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECHH
RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS
HHHHHHHCCEEEECCCCEEEEECCCEEEEECCCHHHHHHCCCCEEEEEECCCCCCCCCCC
GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS
CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA
HHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCEEECCHHCHHHHHHHHHHHHH
FTEARMHEFQENWTEKYESEEFGF
HHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]