| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is hemH [H]
Identifier: 87201348
GI number: 87201348
Start: 3558219
End: 3559232
Strand: Direct
Name: hemH [H]
Synonym: Saro_3336
Alternate gene names: 87201348
Gene position: 3558219-3559232 (Clockwise)
Preceding gene: 87201347
Following gene: 87201349
Centisome position: 99.91
GC content: 67.26
Gene sequence:
>1014_bases ATGCAGCGCCCCGCAGACCACCCCACTGTTCTCACCGGCAAGGTCGGGGTGCTTCTGGTCAACCTCGGCACGCCCGATGC GCCCGATGCGGGCGCGGTGAAGCGCTATCTCAAGGAGTTCCTGTCCGACCGCCGTGTGGTGGAAATTCCCGCGCTCGTCT GGCAGCCGATCCTGCGTGGCATCATCCTGAACACGCGCCCCCGGAAATCAGCGCACGCCTACGCCCAGGTATGGACGGAT GAGGGATCGCCGCTGGCCGCGATCACGGCCGCGCAGGCACGCGCGCTTCAGGCACGGCTGGGCGAAAGCGCGATCGTGCG GCACGCAATGCGCTACCAATCGCCCGCCATGGCGAAAGAGCTGGACGCGCTGCTGCAGGCCGGGTGCGAGCGCATTCTCG TCGCGCCGCTCTACCCGCACTATTCGGGGGCGACGACGGCTTCCGCGCTCGATGCGGTGGCAGACTGGATCAAGGCGCGT CGCCGCCTTCCCGCACTGCGCACCCTGCCGCCTTATCACGACGATCCGGCCTATATCGGCGCGCTTCACGCCGACCTCTC GCGCCAGATCGACGCTCTCGACTTCGCGCCCGAACTGCTGCTGCTGAGTTATCACGGCATGCCCGAACGGACGCTGCACT TGGGCGACCCCTACCACTGCCACTGCCGCAAGACCTCGCGCCTGCTGGGCGAGCGTTTTGCGCAGAGCAATCCGGCGCTG CGGCTGGAGACCACGTTCCAGTCGCGTTTCGGCAAGGCAAAGTGGCTCGAGCCTGCAACCGATGCCGTGCTGGTCGACGA AGCTCGCAAGGGCACGCGCCGCATCGCCATCGCCGCGCCCGGGTTTTCCGCCGATTGCCTGGAAACGCTCGAGGAACTGG CGATCCGCGGCAAGGAAGATTTCGTCGCGGCGGGTGGTACGCACTTCGCCTCGCTCGCCTGTCTCAATGCGGGCGACGAC GGCATGGACATGATCGAGGCGCTGGTCCGGCGCGAGCTTTCGGGCTGGATCTGA
Upstream 100 bases:
>100_bases AATGGTCGCGGTGGCCCCGGCCATCGCCAATGCGCTGTTCTCCGCCACGGGCGTGCGCTTCCGCCGCCTGCCGCTCATTT CCGAAGGACTTTGATTGCCG
Downstream 100 bases:
>100_bases ACGTCCGACCAGAGCCGACATACGGCCTTGGCCCCTGTTGACATGCATGTTAATTACCCGGTTAAATCAGCCCACCGGGA GAGAGCATGGCCAGCATCGC
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase; Protoheme ferro-lyase [H]
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MQRPADHPTVLTGKVGVLLVNLGTPDAPDAGAVKRYLKEFLSDRRVVEIPALVWQPILRGIILNTRPRKSAHAYAQVWTD EGSPLAAITAAQARALQARLGESAIVRHAMRYQSPAMAKELDALLQAGCERILVAPLYPHYSGATTASALDAVADWIKAR RRLPALRTLPPYHDDPAYIGALHADLSRQIDALDFAPELLLLSYHGMPERTLHLGDPYHCHCRKTSRLLGERFAQSNPAL RLETTFQSRFGKAKWLEPATDAVLVDEARKGTRRIAIAAPGFSADCLETLEELAIRGKEDFVAAGGTHFASLACLNAGDD GMDMIEALVRRELSGWI
Sequences:
>Translated_337_residues MQRPADHPTVLTGKVGVLLVNLGTPDAPDAGAVKRYLKEFLSDRRVVEIPALVWQPILRGIILNTRPRKSAHAYAQVWTD EGSPLAAITAAQARALQARLGESAIVRHAMRYQSPAMAKELDALLQAGCERILVAPLYPHYSGATTASALDAVADWIKAR RRLPALRTLPPYHDDPAYIGALHADLSRQIDALDFAPELLLLSYHGMPERTLHLGDPYHCHCRKTSRLLGERFAQSNPAL RLETTFQSRFGKAKWLEPATDAVLVDEARKGTRRIAIAAPGFSADCLETLEELAIRGKEDFVAAGGTHFASLACLNAGDD GMDMIEALVRRELSGWI >Mature_337_residues MQRPADHPTVLTGKVGVLLVNLGTPDAPDAGAVKRYLKEFLSDRRVVEIPALVWQPILRGIILNTRPRKSAHAYAQVWTD EGSPLAAITAAQARALQARLGESAIVRHAMRYQSPAMAKELDALLQAGCERILVAPLYPHYSGATTASALDAVADWIKAR RRLPALRTLPPYHDDPAYIGALHADLSRQIDALDFAPELLLLSYHGMPERTLHLGDPYHCHCRKTSRLLGERFAQSNPAL RLETTFQSRFGKAKWLEPATDAVLVDEARKGTRRIAIAAPGFSADCLETLEELAIRGKEDFVAAGGTHFASLACLNAGDD GMDMIEALVRRELSGWI
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX [H]
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family [H]
Homologues:
Organism=Homo sapiens, GI60499021, Length=304, Percent_Identity=26.6447368421053, Blast_Score=89, Evalue=7e-18, Organism=Homo sapiens, GI60499025, Length=293, Percent_Identity=26.962457337884, Blast_Score=87, Evalue=3e-17, Organism=Escherichia coli, GI1786681, Length=316, Percent_Identity=43.6708860759494, Blast_Score=237, Evalue=8e-64, Organism=Drosophila melanogaster, GI17864156, Length=306, Percent_Identity=22.8758169934641, Blast_Score=81, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001015 - InterPro: IPR019772 [H]
Pfam domain/function: PF00762 Ferrochelatase [H]
EC number: =4.99.1.1 [H]
Molecular weight: Translated: 36919; Mature: 36919
Theoretical pI: Translated: 7.96; Mature: 7.96
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRPADHPTVLTGKVGVLLVNLGTPDAPDAGAVKRYLKEFLSDRRVVEIPALVWQPILRG CCCCCCCCEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHH IILNTRPRKSAHAYAQVWTDEGSPLAAITAAQARALQARLGESAIVRHAMRYQSPAMAKE HHCCCCCCCHHHHHHEEECCCCCCEEHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHH LDALLQAGCERILVAPLYPHYSGATTASALDAVADWIKARRRLPALRTLPPYHDDPAYIG HHHHHHHCHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHH ALHADLSRQIDALDFAPELLLLSYHGMPERTLHLGDPYHCHCRKTSRLLGERFAQSNPAL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEHHHHHHHHHHHHHHCCCCCE RLETTFQSRFGKAKWLEPATDAVLVDEARKGTRRIAIAAPGFSADCLETLEELAIRGKED EEEEHHHHHCCCCCCCCCCCCCEEHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCC FVAAGGTHFASLACLNAGDDGMDMIEALVRRELSGWI EEECCCCHHHHEEEECCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MQRPADHPTVLTGKVGVLLVNLGTPDAPDAGAVKRYLKEFLSDRRVVEIPALVWQPILRG CCCCCCCCEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHH IILNTRPRKSAHAYAQVWTDEGSPLAAITAAQARALQARLGESAIVRHAMRYQSPAMAKE HHCCCCCCCHHHHHHEEECCCCCCEEHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHH LDALLQAGCERILVAPLYPHYSGATTASALDAVADWIKARRRLPALRTLPPYHDDPAYIG HHHHHHHCHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHH ALHADLSRQIDALDFAPELLLLSYHGMPERTLHLGDPYHCHCRKTSRLLGERFAQSNPAL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEHHHHHHHHHHHHHHCCCCCE RLETTFQSRFGKAKWLEPATDAVLVDEARKGTRRIAIAAPGFSADCLETLEELAIRGKED EEEEHHHHHCCCCCCCCCCCCCEEHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCC FVAAGGTHFASLACLNAGDDGMDMIEALVRRELSGWI EEECCCCHHHHEEEECCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA