| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is iorB [H]
Identifier: 87201347
GI number: 87201347
Start: 3555912
End: 3558212
Strand: Direct
Name: iorB [H]
Synonym: Saro_3335
Alternate gene names: 87201347
Gene position: 3555912-3558212 (Clockwise)
Preceding gene: 87201346
Following gene: 87201348
Centisome position: 99.84
GC content: 70.53
Gene sequence:
>2301_bases ATGCGCCTCACGCGGAGGGGGCTGCTGGTGGGGGCAGGGCTCGGCGGAGCCCTGCTTATCGCCTTCCCGCTCATTCCGCG CCGCCACCCGGTTCCACTGCAGGCGGGCGAAGGCGAGCACGTGGTCGACGCCTTCCTCAAGCTGGGGCGTGCCCGGGGCG GCAAGGACTGCATCCTGACCGTCGCGGTCCCGTTCTGCGAGATGGGACAGGGCATCACCACGCTCGTCGCGCAGATCGTC GCGGACGAGGCCGGGGCCGACTGGCGCAAGGTCGCGGTCGAGGCCGCGCCGATCAGTCCCGCCTATGCCGACCCGGTGCT CTCGGCAAAGTGGGCGCCGTTGTGGATGCCGGCATTCGCTTCGCTGGGCAATGACGCCGAGGGCACGCTCGCCCGCCTTC ATGCAGAGCGCGGGCCGATGATGATTACCGCCGATGGCACGGCGCTGGCGGCGTTCGAGACTCCCTTGCGCGAGGCCGGG GCAGCCCTGCGCGCGATGATGGCCCAGGCTGCCGCGGACAAGTGGGGCGTGGGCTGGGAGGAGTGCGAGACCGGGGACAG CGCCGTGACCCACGGCAAGAAGCGCCTCTCCTTTGCCGAACTGCTGGCGGATGCGGTAGAGTACGACCCGCCCGACCTGC CCGTCCTGCGCGCCGAGCCCCCGCGCGAAAGGCCCGGCCAGTTTCCCGAAGGTGCCCCCGCCCGGCACCCGCGCCTCGAT CTTCCAGCCAAGGTCGACGGCAGCTTCACCTTTGCCGGCGACGTGCGCCTGCCGGGCATGGTCCACGCCGCGATCGCCCA CGCGCCGCAAGGATCGGCGGTCCTGTCGACCTATGACAAGCAGGCTGCGGCCTCGGTGCGCGGGCTGGTGGGCGTGGTTC ATGCCCGGCGCTGGCTCGCCGCCGTCGCCACCAACTGGCACGCCGCCGACAAGGCCTTGCGCGCGATGGAGCCACGTTTT CGCGCCGATGGCCCGGTGGCCGACAACGAGAAGGTCCTCGTGGCGCTCGACAAGGCGCTGGACAAGGGCGACGCGGTGCG ACTCATGGCCGAGGGCGATCCCGATGCGCTGCTCGAAAAGCCGGTCCTCAGCGCCCGCTACGATGTCGAACCGGCCCTCC ACGCCCCGCTCGAAACCACCAGCGCCACCGCCCGCCTTCGCGATGGCAAGCTGGAGCTGTGGATCGCGACCCAGGCTCCC GAGCGAGCGCGCCGCGCCGCCGCACGCGCGGCGGGTCTCTCGCGGCAGGACGTGATCGTCTATCCGATGCACGCGGGCGG CAGCTTCGACGCTCGGCTCGACGTGCGCATCGCCGCCGAAGTTGCCACCATCGCGACCATCATCCGCAAGCCCGTGCAAC TGACGTGGTCGCGCTGGCAGGAATCGCTGGCGGGCATTCCCCGAACCCCGGTTTCGGCGCGGCTCGACGGCGCGCTCAGC CCCGACAAGTCGCGCGTGCTGGGCTGGCGCAGCCGCCTCGCACTTCCCGCCACGACAATCGAATCGGGCGCACGCCTGCT CGATGGGCAAGGCATCGGCGATGCACTCGACTTGCAGGACCGGGCCGACCCGATGGCCTGTGAAGGCGCGATGCCGCTCT ACCGCATTCCCGAAAAGGCGGTGGACCACGTCCCCGCCGCCCTGCCCCTGCCCACGGCGCGCTTTCGCGGACAGGCGCAC GGCTACACCGCATTCTTCACGGAAAGCTTCGTGGACGAGCTGGCCCATCTTGCGGGGCGCGAGCCACTGTCGTTTCGCGT CGGCATGCTCGATGGCCAGCCGCGCCTTGTCGCCTGCCTTTCCGGCGTCGCCAGGCTGGCGCAATGGGGCGGCGGGGTCG ATGCATCGGGACAGGGCATTGCCTGCCATCGCATGGATCTTGCCTCGGGAGGCGGCGCGGTGCGTTCCGGCATGATCGCG GTCGTCGCCACCGCACGGCAGGAAGCCGGCGTCGTGCGGGTCGAGCGGCTGAGCGCCTTTGTCGACATCGGCCGCATCGT GAACATGGATATCGCGCGCCAGCAGATCGAGGGCGGCTTGGTGTTCGGCCTCGCCCATGCGGTCGGCGGGTCGAGCGGCC ACGCTCGCGGAAGGCCGCTGGCGGGCCATCTCTCGCAACTCGGCCTGCCTCTGCTGGCCGATTGCCCGAAGGTCGATATT GCCTTTGCCGACAGCAACGAAGAGCCGTTCGACCCCGGCGAACTCGGAATGGTCGCGGTGGCCCCGGCCATCGCCAATGC GCTGTTCTCCGCCACGGGCGTGCGCTTCCGCCGCCTGCCGCTCATTTCCGAAGGACTTTGA
Upstream 100 bases:
>100_bases CCGGCAACCCGCCTGCCGCAGGCGATGGCCCGCAGGCCGAGGCGTTCCTCTCCATCGCGCGCGGCGTCCTCGCCTGGCTC GACGGCAGGCGCTGACGCCG
Downstream 100 bases:
>100_bases TTGCCGATGCAGCGCCCCGCAGACCACCCCACTGTTCTCACCGGCAAGGTCGGGGTGCTTCTGGTCAACCTCGGCACGCC CGATGCGCCCGATGCGGGCG
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 766; Mature: 766
Protein sequence:
>766_residues MRLTRRGLLVGAGLGGALLIAFPLIPRRHPVPLQAGEGEHVVDAFLKLGRARGGKDCILTVAVPFCEMGQGITTLVAQIV ADEAGADWRKVAVEAAPISPAYADPVLSAKWAPLWMPAFASLGNDAEGTLARLHAERGPMMITADGTALAAFETPLREAG AALRAMMAQAAADKWGVGWEECETGDSAVTHGKKRLSFAELLADAVEYDPPDLPVLRAEPPRERPGQFPEGAPARHPRLD LPAKVDGSFTFAGDVRLPGMVHAAIAHAPQGSAVLSTYDKQAAASVRGLVGVVHARRWLAAVATNWHAADKALRAMEPRF RADGPVADNEKVLVALDKALDKGDAVRLMAEGDPDALLEKPVLSARYDVEPALHAPLETTSATARLRDGKLELWIATQAP ERARRAAARAAGLSRQDVIVYPMHAGGSFDARLDVRIAAEVATIATIIRKPVQLTWSRWQESLAGIPRTPVSARLDGALS PDKSRVLGWRSRLALPATTIESGARLLDGQGIGDALDLQDRADPMACEGAMPLYRIPEKAVDHVPAALPLPTARFRGQAH GYTAFFTESFVDELAHLAGREPLSFRVGMLDGQPRLVACLSGVARLAQWGGGVDASGQGIACHRMDLASGGGAVRSGMIA VVATARQEAGVVRVERLSAFVDIGRIVNMDIARQQIEGGLVFGLAHAVGGSSGHARGRPLAGHLSQLGLPLLADCPKVDI AFADSNEEPFDPGELGMVAVAPAIANALFSATGVRFRRLPLISEGL
Sequences:
>Translated_766_residues MRLTRRGLLVGAGLGGALLIAFPLIPRRHPVPLQAGEGEHVVDAFLKLGRARGGKDCILTVAVPFCEMGQGITTLVAQIV ADEAGADWRKVAVEAAPISPAYADPVLSAKWAPLWMPAFASLGNDAEGTLARLHAERGPMMITADGTALAAFETPLREAG AALRAMMAQAAADKWGVGWEECETGDSAVTHGKKRLSFAELLADAVEYDPPDLPVLRAEPPRERPGQFPEGAPARHPRLD LPAKVDGSFTFAGDVRLPGMVHAAIAHAPQGSAVLSTYDKQAAASVRGLVGVVHARRWLAAVATNWHAADKALRAMEPRF RADGPVADNEKVLVALDKALDKGDAVRLMAEGDPDALLEKPVLSARYDVEPALHAPLETTSATARLRDGKLELWIATQAP ERARRAAARAAGLSRQDVIVYPMHAGGSFDARLDVRIAAEVATIATIIRKPVQLTWSRWQESLAGIPRTPVSARLDGALS PDKSRVLGWRSRLALPATTIESGARLLDGQGIGDALDLQDRADPMACEGAMPLYRIPEKAVDHVPAALPLPTARFRGQAH GYTAFFTESFVDELAHLAGREPLSFRVGMLDGQPRLVACLSGVARLAQWGGGVDASGQGIACHRMDLASGGGAVRSGMIA VVATARQEAGVVRVERLSAFVDIGRIVNMDIARQQIEGGLVFGLAHAVGGSSGHARGRPLAGHLSQLGLPLLADCPKVDI AFADSNEEPFDPGELGMVAVAPAIANALFSATGVRFRRLPLISEGL >Mature_766_residues MRLTRRGLLVGAGLGGALLIAFPLIPRRHPVPLQAGEGEHVVDAFLKLGRARGGKDCILTVAVPFCEMGQGITTLVAQIV ADEAGADWRKVAVEAAPISPAYADPVLSAKWAPLWMPAFASLGNDAEGTLARLHAERGPMMITADGTALAAFETPLREAG AALRAMMAQAAADKWGVGWEECETGDSAVTHGKKRLSFAELLADAVEYDPPDLPVLRAEPPRERPGQFPEGAPARHPRLD LPAKVDGSFTFAGDVRLPGMVHAAIAHAPQGSAVLSTYDKQAAASVRGLVGVVHARRWLAAVATNWHAADKALRAMEPRF RADGPVADNEKVLVALDKALDKGDAVRLMAEGDPDALLEKPVLSARYDVEPALHAPLETTSATARLRDGKLELWIATQAP ERARRAAARAAGLSRQDVIVYPMHAGGSFDARLDVRIAAEVATIATIIRKPVQLTWSRWQESLAGIPRTPVSARLDGALS PDKSRVLGWRSRLALPATTIESGARLLDGQGIGDALDLQDRADPMACEGAMPLYRIPEKAVDHVPAALPLPTARFRGQAH GYTAFFTESFVDELAHLAGREPLSFRVGMLDGQPRLVACLSGVARLAQWGGGVDASGQGIACHRMDLASGGGAVRSGMIA VVATARQEAGVVRVERLSAFVDIGRIVNMDIARQQIEGGLVFGLAHAVGGSSGHARGRPLAGHLSQLGLPLLADCPKVDI AFADSNEEPFDPGELGMVAVAPAIANALFSATGVRFRRLPLISEGL
Specific function: Specific towards N-containing N-heterocyclic substrates, including isoquinoline, isoquinolin-5-ol, phthalazine and quinazoline [H]
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786478, Length=129, Percent_Identity=34.8837209302326, Blast_Score=68, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR012368 - InterPro: IPR006311 [H]
Pfam domain/function: PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.3.99.16 [H]
Molecular weight: Translated: 80924; Mature: 80924
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLTRRGLLVGAGLGGALLIAFPLIPRRHPVPLQAGEGEHVVDAFLKLGRARGGKDCILT CCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE VAVPFCEMGQGITTLVAQIVADEAGADWRKVAVEAAPISPAYADPVLSAKWAPLWMPAFA EECCHHHHCCCHHHHHHHHHHHCCCCCHHHEEEEECCCCCHHCCCCCCCCCCCHHHHHHH SLGNDAEGTLARLHAERGPMMITADGTALAAFETPLREAGAALRAMMAQAAADKWGVGWE HCCCCCCHHHHHHHHCCCCEEEEECCCEEEHHHCCHHHHHHHHHHHHHHHHHHHCCCCHH ECETGDSAVTHGKKRLSFAELLADAVEYDPPDLPVLRAEPPRERPGQFPEGAPARHPRLD HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC LPAKVDGSFTFAGDVRLPGMVHAAIAHAPQGSAVLSTYDKQAAASVRGLVGVVHARRWLA CCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVATNWHAADKALRAMEPRFRADGPVADNEKVLVALDKALDKGDAVRLMAEGDPDALLEK HHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHCCCCCEEEEEECCCCHHHHHC PVLSARYDVEPALHAPLETTSATARLRDGKLELWIATQAPERARRAAARAAGLSRQDVIV CHHHCCCCCCCHHCCCCCCCCHHHEEECCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEE YPMHAGGSFDARLDVRIAAEVATIATIIRKPVQLTWSRWQESLAGIPRTPVSARLDGALS EEECCCCCCCCEEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCC PDKSRVLGWRSRLALPATTIESGARLLDGQGIGDALDLQDRADPMACEGAMPLYRIPEKA CCHHHHHHHHHHCCCCHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHH VDHVPAALPLPTARFRGQAHGYTAFFTESFVDELAHLAGREPLSFRVGMLDGQPRLVACL HHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH SGVARLAQWGGGVDASGQGIACHRMDLASGGGAVRSGMIAVVATARQEAGVVRVERLSAF HHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHCCEEEEEEEHHHHCCCHHHHHHHHH VDIGRIVNMDIARQQIEGGLVFGLAHAVGGSSGHARGRPLAGHLSQLGLPLLADCPKVDI HHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCCCHHHHHHHCCCCHHCCCCCEEE AFADSNEEPFDPGELGMVAVAPAIANALFSATGVRFRRLPLISEGL EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHCCC >Mature Secondary Structure MRLTRRGLLVGAGLGGALLIAFPLIPRRHPVPLQAGEGEHVVDAFLKLGRARGGKDCILT CCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE VAVPFCEMGQGITTLVAQIVADEAGADWRKVAVEAAPISPAYADPVLSAKWAPLWMPAFA EECCHHHHCCCHHHHHHHHHHHCCCCCHHHEEEEECCCCCHHCCCCCCCCCCCHHHHHHH SLGNDAEGTLARLHAERGPMMITADGTALAAFETPLREAGAALRAMMAQAAADKWGVGWE HCCCCCCHHHHHHHHCCCCEEEEECCCEEEHHHCCHHHHHHHHHHHHHHHHHHHCCCCHH ECETGDSAVTHGKKRLSFAELLADAVEYDPPDLPVLRAEPPRERPGQFPEGAPARHPRLD HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC LPAKVDGSFTFAGDVRLPGMVHAAIAHAPQGSAVLSTYDKQAAASVRGLVGVVHARRWLA CCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVATNWHAADKALRAMEPRFRADGPVADNEKVLVALDKALDKGDAVRLMAEGDPDALLEK HHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHCCCCCEEEEEECCCCHHHHHC PVLSARYDVEPALHAPLETTSATARLRDGKLELWIATQAPERARRAAARAAGLSRQDVIV CHHHCCCCCCCHHCCCCCCCCHHHEEECCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEE YPMHAGGSFDARLDVRIAAEVATIATIIRKPVQLTWSRWQESLAGIPRTPVSARLDGALS EEECCCCCCCCEEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCC PDKSRVLGWRSRLALPATTIESGARLLDGQGIGDALDLQDRADPMACEGAMPLYRIPEKA CCHHHHHHHHHHCCCCHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHH VDHVPAALPLPTARFRGQAHGYTAFFTESFVDELAHLAGREPLSFRVGMLDGQPRLVACL HHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH SGVARLAQWGGGVDASGQGIACHRMDLASGGGAVRSGMIAVVATARQEAGVVRVERLSAF HHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHCCEEEEEEEHHHHCCCHHHHHHHHH VDIGRIVNMDIARQQIEGGLVFGLAHAVGGSSGHARGRPLAGHLSQLGLPLLADCPKVDI HHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCCCHHHHHHHCCCCHHCCCCCEEE AFADSNEEPFDPGELGMVAVAPAIANALFSATGVRFRRLPLISEGL EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7782304; 8157655 [H]