| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201327
Identifier: 87201327
GI number: 87201327
Start: 3538648
End: 3539553
Strand: Direct
Name: 87201327
Synonym: Saro_3315
Alternate gene names: NA
Gene position: 3538648-3539553 (Clockwise)
Preceding gene: 87201323
Following gene: 87201331
Centisome position: 99.36
GC content: 69.54
Gene sequence:
>906_bases ATGAACGACCGCAACGACTGGAACGGGAACGATCGCTGGCGCGACGAGGAACGTGGCGACCACGGCAGGTCCGCGCATGG CTATCCGGGCTCGCGCTACACCGGCTCGGGCTATCCGGGGACGACGTATGGCGGACCGGCTTCATCCTACCGCGACGATC CGGACGGTTTCGAGCGCGATCAATGGGGCCGCTCGGGCACATCGGGGGCGGTGACGCCGCGCAACGATCCCAGATCGGGG CGCAGCGGCAGCGAGATGCGCGGCGACAGGCGCACGCACGACTGGGAAGTCGGCGACCGCCACTATACCGGACAGGGCCG TCCGCAATGGCGCGACACGGCGGGTGGCTATGGCGCAGCCAGTTCGCCCGACTGGTTCACCGGCGAGGACTACGGCGGCG GCACCCGCGCCTGGTCGGGTTCGCGCCAGCCGGGCCTTTCCTACGGTCCGGGTGGATACCCTGCTTCCGCCGGGTACAGC GGGCGCGGCAGCTACGGCTATGACGACGGGCGCGGATTCATGGACCGCGCGGTCGACGAAGTGCGCAGCTGGTTCGGCGA TGACGAAGCTGCGCAGCGGCGCGAGGAGGACCATCGCGGTCGCGGCCCAAGCGACTACACCCGCTCGGACGAACGCATCC GCGAGGACGTGAACGACCGGCTCACCGACAATCCAAGGCTGGACGCCCGCAACGTCTCGGTCATGGTGACCGAAGGCGAA GTTACCCTCTCGGGTACGGTCGGCAACCGCGAGGACAAGCGCCGCGCGGAAGACTGCGCCGACGCCGTCTCGGGCGTGAA GCACGTCCAGAACAACCTGCGGGTGCGCAGCGGAAGCAACCTCGAAGGCCAGGGCGGAACGCTTGGCTGGGGCGGTGGCG ACAGCTCGGTGACGCCCACCGCCTGA
Upstream 100 bases:
>100_bases GCGGCGCGACGAGCCGCCTGCCCCTTGCGACCGGACCGGGCCCCTTGCGGGGCACGGGGCCGTTGTGTGGGCGGGAGATT CCCTTTCGAGGAGAGATGCG
Downstream 100 bases:
>100_bases CGCCGGTCAGTGCGCGGCCTCCGGGCCGCGCACGCAGCCCGATGCCGCGAGTTGCGCATCGACTTGTGCCAGAAGCCGCG CGAGACCCTCCTCGCTGCGG
Product: transport-associated protein
Products: NA
Alternate protein names: Osmotically Inducible Sensory Protein; Periplasmic Or Secreted Lipoprotein; Pe_pgrs; Osmotic Sensory Protein; Osmotically Inducible Protein Y
Number of amino acids: Translated: 301; Mature: 301
Protein sequence:
>301_residues MNDRNDWNGNDRWRDEERGDHGRSAHGYPGSRYTGSGYPGTTYGGPASSYRDDPDGFERDQWGRSGTSGAVTPRNDPRSG RSGSEMRGDRRTHDWEVGDRHYTGQGRPQWRDTAGGYGAASSPDWFTGEDYGGGTRAWSGSRQPGLSYGPGGYPASAGYS GRGSYGYDDGRGFMDRAVDEVRSWFGDDEAAQRREEDHRGRGPSDYTRSDERIREDVNDRLTDNPRLDARNVSVMVTEGE VTLSGTVGNREDKRRAEDCADAVSGVKHVQNNLRVRSGSNLEGQGGTLGWGGGDSSVTPTA
Sequences:
>Translated_301_residues MNDRNDWNGNDRWRDEERGDHGRSAHGYPGSRYTGSGYPGTTYGGPASSYRDDPDGFERDQWGRSGTSGAVTPRNDPRSG RSGSEMRGDRRTHDWEVGDRHYTGQGRPQWRDTAGGYGAASSPDWFTGEDYGGGTRAWSGSRQPGLSYGPGGYPASAGYS GRGSYGYDDGRGFMDRAVDEVRSWFGDDEAAQRREEDHRGRGPSDYTRSDERIREDVNDRLTDNPRLDARNVSVMVTEGE VTLSGTVGNREDKRRAEDCADAVSGVKHVQNNLRVRSGSNLEGQGGTLGWGGGDSSVTPTA >Mature_301_residues MNDRNDWNGNDRWRDEERGDHGRSAHGYPGSRYTGSGYPGTTYGGPASSYRDDPDGFERDQWGRSGTSGAVTPRNDPRSG RSGSEMRGDRRTHDWEVGDRHYTGQGRPQWRDTAGGYGAASSPDWFTGEDYGGGTRAWSGSRQPGLSYGPGGYPASAGYS GRGSYGYDDGRGFMDRAVDEVRSWFGDDEAAQRREEDHRGRGPSDYTRSDERIREDVNDRLTDNPRLDARNVSVMVTEGE VTLSGTVGNREDKRRAEDCADAVSGVKHVQNNLRVRSGSNLEGQGGTLGWGGGDSSVTPTA
Specific function: Unknown
COG id: COG2823
COG function: function code R; Predicted periplasmic or secreted lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32867; Mature: 32867
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: PS50914 BON
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDRNDWNGNDRWRDEERGDHGRSAHGYPGSRYTGSGYPGTTYGGPASSYRDDPDGFERD CCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH QWGRSGTSGAVTPRNDPRSGRSGSEMRGDRRTHDWEVGDRHYTGQGRPQWRDTAGGYGAA HCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC SSPDWFTGEDYGGGTRAWSGSRQPGLSYGPGGYPASAGYSGRGSYGYDDGRGFMDRAVDE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH VRSWFGDDEAAQRREEDHRGRGPSDYTRSDERIREDVNDRLTDNPRLDARNVSVMVTEGE HHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC VTLSGTVGNREDKRRAEDCADAVSGVKHVQNNLRVRSGSNLEGQGGTLGWGGGDSSVTPT EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCEECCCCCCCCCCCEEECCCCCCCCCCC A C >Mature Secondary Structure MNDRNDWNGNDRWRDEERGDHGRSAHGYPGSRYTGSGYPGTTYGGPASSYRDDPDGFERD CCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH QWGRSGTSGAVTPRNDPRSGRSGSEMRGDRRTHDWEVGDRHYTGQGRPQWRDTAGGYGAA HCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC SSPDWFTGEDYGGGTRAWSGSRQPGLSYGPGGYPASAGYSGRGSYGYDDGRGFMDRAVDE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH VRSWFGDDEAAQRREEDHRGRGPSDYTRSDERIREDVNDRLTDNPRLDARNVSVMVTEGE HHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC VTLSGTVGNREDKRRAEDCADAVSGVKHVQNNLRVRSGSNLEGQGGTLGWGGGDSSVTPT EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCEECCCCCCCCCCCEEECCCCCCCCCCC A C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA