| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is thiG [H]
Identifier: 87201302
GI number: 87201302
Start: 3507383
End: 3508378
Strand: Direct
Name: thiG [H]
Synonym: Saro_3290
Alternate gene names: 87201302
Gene position: 3507383-3508378 (Clockwise)
Preceding gene: 87201301
Following gene: 87201305
Centisome position: 98.48
GC content: 66.47
Gene sequence:
>996_bases ATGACCGGACAGCTATCCCTTACCGTCAACGGCGAACCCCGCCGCGCCGCGCCCGGATCGATCGCCGACCTGGTGCGCAG CCTGGAACTCGATCCGGCCAAGGTCGCGGTCGAACGCAATGGCGAGATCGTCCCGCGCTCGACCTTGGCCAGCGTGGCGA TCGCCGATGGGGACGTGCTGGAAATCGTGCATTTCGTGGGTGGAGGACAATCGGACGTGACCGACAACAACGATACCTGG ACCGTCGCCGGACGCACCTTCACCTCGCGCCTGATCGTGGGCACGGGCAAGTACAAGGACTTCGAGCAGAACGCCGCCGC GGTCGAAGCATCGGGCGCGGAGATCGTCACCGTCGCCGTGCGCAGGGTCAACGTCTCGGACCCCAAGGCGCCGATGCTGA CCGACTACATCGACCCGAAGAAAATCACCTACCTGCCCAACACCGCCGGCTGCTTTACCGCCGAGGACGCGATCCGCACG CTGCGCCTTGCGCGCGAGGCGGGCGGCTGGGATCTGGTGAAGCTGGAAGTCCTGGGCGAGGCGCGCACGCTCTATCCCAA CATGATCGAAACGATCCGCGCGACCGAAGTCCTGGCCAAGGAAGGCTTCCTGCCAATGGTCTATTGCGTCGACGATCCGA TCGCTGCCAAGCAGCTTGAAGACGCGGGCGCGGTCGCCGTCATGCCACTGGGCGCGCCGATCGGTTCGGGCCTCGGCATC CAGAACAAGGTAACGGTGCGGCTGATCGTCGAAGGCGCCAAGGTGCCGGTGCTCGTCGACGCAGGCGTGGGCACCGCTTC CGAAGCCGCCGTGGCGATGGAGCTTGGCTGCGATGGCGTGCTGATGAACACCGCCATCGCCGAGGCCAAGGACCCGATCC GCATGGCCCGCGCAATGAAGCTGGCCGTTCAGGCCGGACGCGACGCCTATCTCGCCGGCCGCATGCCGACGCGCAAGTAC GCCGATCCGTCGAGCCCGCTGGCCGGGTTGATCTGA
Upstream 100 bases:
>100_bases TTGCGGCGTCGTGCTGGTGGCCGCCGCCCACGTCATCAACATGCGGCACGCGCACTAAGCGCCACTTGCGCCCGCACACT GCGCCGCTAAAGCGGGCCGC
Downstream 100 bases:
>100_bases GGATCGAGGCCCCCCGCTTTCGCGGGGAGCGCCCCATCCCGCTTGCGGATCAGCCGACGATGCCCGCCGCTGCCAGCACG GCCAGGGTCAGGATGTCGGG
Product: bifunctional sulfur carrier protein/thiazole synthase protein
Products: 4-methyl-5-(beta-hydroxyethyl)thiazole phosphate; 4-hydroxy-benzyl-alcohol; C1 of tyrosine; ThiS protein [C]
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MTGQLSLTVNGEPRRAAPGSIADLVRSLELDPAKVAVERNGEIVPRSTLASVAIADGDVLEIVHFVGGGQSDVTDNNDTW TVAGRTFTSRLIVGTGKYKDFEQNAAAVEASGAEIVTVAVRRVNVSDPKAPMLTDYIDPKKITYLPNTAGCFTAEDAIRT LRLAREAGGWDLVKLEVLGEARTLYPNMIETIRATEVLAKEGFLPMVYCVDDPIAAKQLEDAGAVAVMPLGAPIGSGLGI QNKVTVRLIVEGAKVPVLVDAGVGTASEAAVAMELGCDGVLMNTAIAEAKDPIRMARAMKLAVQAGRDAYLAGRMPTRKY ADPSSPLAGLI
Sequences:
>Translated_331_residues MTGQLSLTVNGEPRRAAPGSIADLVRSLELDPAKVAVERNGEIVPRSTLASVAIADGDVLEIVHFVGGGQSDVTDNNDTW TVAGRTFTSRLIVGTGKYKDFEQNAAAVEASGAEIVTVAVRRVNVSDPKAPMLTDYIDPKKITYLPNTAGCFTAEDAIRT LRLAREAGGWDLVKLEVLGEARTLYPNMIETIRATEVLAKEGFLPMVYCVDDPIAAKQLEDAGAVAVMPLGAPIGSGLGI QNKVTVRLIVEGAKVPVLVDAGVGTASEAAVAMELGCDGVLMNTAIAEAKDPIRMARAMKLAVQAGRDAYLAGRMPTRKY ADPSSPLAGLI >Mature_330_residues TGQLSLTVNGEPRRAAPGSIADLVRSLELDPAKVAVERNGEIVPRSTLASVAIADGDVLEIVHFVGGGQSDVTDNNDTWT VAGRTFTSRLIVGTGKYKDFEQNAAAVEASGAEIVTVAVRRVNVSDPKAPMLTDYIDPKKITYLPNTAGCFTAEDAIRTL RLAREAGGWDLVKLEVLGEARTLYPNMIETIRATEVLAKEGFLPMVYCVDDPIAAKQLEDAGAVAVMPLGAPIGSGLGIQ NKVTVRLIVEGAKVPVLVDAGVGTASEAAVAMELGCDGVLMNTAIAEAKDPIRMARAMKLAVQAGRDAYLAGRMPTRKYA DPSSPLAGLI
Specific function: Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S [H]
COG id: COG2022
COG function: function code H; Uncharacterized enzyme of thiazole biosynthesis
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thiG family [H]
Homologues:
Organism=Escherichia coli, GI48994993, Length=250, Percent_Identity=45.6, Blast_Score=216, Evalue=2e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR008867 [H]
Pfam domain/function: PF05690 ThiG [H]
EC number: NA
Molecular weight: Translated: 34799; Mature: 34668
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGQLSLTVNGEPRRAAPGSIADLVRSLELDPAKVAVERNGEIVPRSTLASVAIADGDVL CCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHEEEEECCCCCCCCHHHHEEEECCCCHH EIVHFVGGGQSDVTDNNDTWTVAGRTFTSRLIVGTGKYKDFEQNAAAVEASGAEIVTVAV HHHHHHCCCCCCCCCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCEEECCCCEEEEEEE RRVNVSDPKAPMLTDYIDPKKITYLPNTAGCFTAEDAIRTLRLAREAGGWDLVKLEVLGE EEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEHHHHHHHHHHHHHCCCCEEEEEEEECC ARTLYPNMIETIRATEVLAKEGFLPMVYCVDDPIAAKQLEDAGAVAVMPLGAPIGSGLGI CHHHCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCEEEEEECCCCCCCCCC QNKVTVRLIVEGAKVPVLVDAGVGTASEAAVAMELGCDGVLMNTAIAEAKDPIRMARAMK CCEEEEEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCEEEHHHHHHCCCHHHHHHHHH LAVQAGRDAYLAGRMPTRKYADPSSPLAGLI HHHHCCCCEEEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TGQLSLTVNGEPRRAAPGSIADLVRSLELDPAKVAVERNGEIVPRSTLASVAIADGDVL CCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHEEEEECCCCCCCCHHHHEEEECCCCHH EIVHFVGGGQSDVTDNNDTWTVAGRTFTSRLIVGTGKYKDFEQNAAAVEASGAEIVTVAV HHHHHHCCCCCCCCCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCEEECCCCEEEEEEE RRVNVSDPKAPMLTDYIDPKKITYLPNTAGCFTAEDAIRTLRLAREAGGWDLVKLEVLGE EEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEHHHHHHHHHHHHHCCCCEEEEEEEECC ARTLYPNMIETIRATEVLAKEGFLPMVYCVDDPIAAKQLEDAGAVAVMPLGAPIGSGLGI CHHHCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCEEEEEECCCCCCCCCC QNKVTVRLIVEGAKVPVLVDAGVGTASEAAVAMELGCDGVLMNTAIAEAKDPIRMARAMK CCEEEEEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCEEEHHHHHHCCCHHHHHHHHH LAVQAGRDAYLAGRMPTRKYADPSSPLAGLI HHHHCCCCEEEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: deoxyxylulose-5-phosphate; ThiS-COSH; L-tyrosine [C]
Specific reaction: deoxyxylulose-5-phosphate + ThiS-COSH + L-tyrosine = 4-methyl-5-(beta-hydroxyethyl)thiazole phosphate + 4-hydroxy-benzyl-alcohol + C1 of tyrosine + ThiS protein [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA