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The map label for this gene is rfbE [H]

Identifier: 87201245

GI number: 87201245

Start: 3453763

End: 3455184

Strand: Reverse

Name: rfbE [H]

Synonym: Saro_3233

Alternate gene names: 87201245

Gene position: 3455184-3453763 (Counterclockwise)

Preceding gene: 87201247

Following gene: 87201244

Centisome position: 97.01

GC content: 64.14

Gene sequence:

>1422_bases
ATGGTCGTAAGCATCGTGACGGTGCCGATCTATCTGCATGTCATCGGCGGCGAGCGCTATGGCGCGCTGCTGATCGCCTG
GCTTCTCCTCGGCTACTTCGGGCAGGCCGATTTCGGCATCGCCCGTGCGATCACGCACCGGATCTCGGCCCTGGGACGGC
AATCGCGCCAGCAGAATGCCGAGACGCTGTGGTCGGGCATTGCGGGCGTCATGGTCTTCAGCCTGTTGAGCGCCCTCCTG
GTCTATGGAGCTTCCGGATATTTCTTCTCCGGTCCGTTCAAGGTGGGCGAAAGCCTGCGGGCCGAGATGATGGCATCGCG
GGTTGCGCTGGCGCTGTGCATTCCGGTCATTGCCATCACCAGTGTCTTTGCGGGCGCCCTGATGGGGCTGGAGCGGTTCA
AGCTGGTTTCGGCGGGCAACCTTGTCAGTTCCATCGCGATGCAGGTCCTCCCCCTGCTCGTCGCGTACTATGTCGGCAGC
AATCTCACCGGCCTTATCTTCGCGGCGCTTTTCGGCCGGGCGATCGGCCTTCTGATCGCGGCGGGAGGTGCGTGGCTGAC
GATGCTGCGAGGGCAGGCGATATCGGTCTCCCTCGCCGAATTCCGCCACCTGTTCACGTTCGGCGCCTGGATCCTGCTGA
CGATGATCGTCGGACCCATGATGACGATGGCCGATCGTTTCGTGATCGGTGGCACGCTCGGGGCCACGGCGGTTGCGGTC
TATACCGTGCCGTTCCAGATCGCGAGCCGCTCGGCCATGTTCCCCTATGCCGTATCGCAGGTCCTTTTTCCGCGGTTCGC
GTCCGACAGCGGGGAAAGATCGCAGGAGCGATGCCGCAGTTCGACCGTGCTGATCGCGCAGGTCTACGCGCCAATGGTGA
TCGGACTTTCCTGCCTCGCCGCACCGCTGCTGCACTTGTGGATCGGCACAAAGCTTGATCCGCGATCCATCCTCATCGGC
CAGATCGTGATCACCGGATTCTGGGCCAACGCAATCGCGGGTGTGCCTTACGCTTATATCCAGGCGCGGGGAAATCCGCG
CTTTACCGCCCTGCTCCACGTGGCGGAGCTGCCATTCTACACGGCTGCGCTGTATCTGCTGGGAATGAACTACGGGCTCG
CGGGCGTCGCCGCCGCCTTCACCTTGCGCTGCGCGGTCGACTGCGTGCTGCTCATGGGAGCTGCGAAGTTGTGGACGCGC
GAGATGGCGGCACGGCTGGCGGGTCCTGTCGCGCTCGTGTTGCTTTCGATTGTGGCCGGGCAGATGTTCCAGGGCTGGGT
CGGCGCATTCCTCGCTGCCTTCGTCCTTGGCGGGGCGGGCGGCGTGCTCATGCTTGTCCAAATGCCCGACGAAGTCCGAT
CCCAACTCGACAAGACCGCGCTCGCCCGCTTCCTGCCCCGCTGGACGGCGAAAGCGGCGTGA

Upstream 100 bases:

>100_bases
GGCGCGTCCGGTTCGACGAAGTGGGAATCAGATTGCTTCCGGATATGACATGCGCCTCGCGGTAAACGCCGTCTACAGTA
TTGCCGGTGCGGCAATCCCG

Downstream 100 bases:

>100_bases
TCGCCGTGCAAGAACCCCGACACAGATCCCGGAAGGACCATATGCTGGAATCAGTCTCGTCGTGTGCCTATTGCGGCGAA
AGCGCCCACGAACGCGCCTC

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MVVSIVTVPIYLHVIGGERYGALLIAWLLLGYFGQADFGIARAITHRISALGRQSRQQNAETLWSGIAGVMVFSLLSALL
VYGASGYFFSGPFKVGESLRAEMMASRVALALCIPVIAITSVFAGALMGLERFKLVSAGNLVSSIAMQVLPLLVAYYVGS
NLTGLIFAALFGRAIGLLIAAGGAWLTMLRGQAISVSLAEFRHLFTFGAWILLTMIVGPMMTMADRFVIGGTLGATAVAV
YTVPFQIASRSAMFPYAVSQVLFPRFASDSGERSQERCRSSTVLIAQVYAPMVIGLSCLAAPLLHLWIGTKLDPRSILIG
QIVITGFWANAIAGVPYAYIQARGNPRFTALLHVAELPFYTAALYLLGMNYGLAGVAAAFTLRCAVDCVLLMGAAKLWTR
EMAARLAGPVALVLLSIVAGQMFQGWVGAFLAAFVLGGAGGVLMLVQMPDEVRSQLDKTALARFLPRWTAKAA

Sequences:

>Translated_473_residues
MVVSIVTVPIYLHVIGGERYGALLIAWLLLGYFGQADFGIARAITHRISALGRQSRQQNAETLWSGIAGVMVFSLLSALL
VYGASGYFFSGPFKVGESLRAEMMASRVALALCIPVIAITSVFAGALMGLERFKLVSAGNLVSSIAMQVLPLLVAYYVGS
NLTGLIFAALFGRAIGLLIAAGGAWLTMLRGQAISVSLAEFRHLFTFGAWILLTMIVGPMMTMADRFVIGGTLGATAVAV
YTVPFQIASRSAMFPYAVSQVLFPRFASDSGERSQERCRSSTVLIAQVYAPMVIGLSCLAAPLLHLWIGTKLDPRSILIG
QIVITGFWANAIAGVPYAYIQARGNPRFTALLHVAELPFYTAALYLLGMNYGLAGVAAAFTLRCAVDCVLLMGAAKLWTR
EMAARLAGPVALVLLSIVAGQMFQGWVGAFLAAFVLGGAGGVLMLVQMPDEVRSQLDKTALARFLPRWTAKAA
>Mature_473_residues
MVVSIVTVPIYLHVIGGERYGALLIAWLLLGYFGQADFGIARAITHRISALGRQSRQQNAETLWSGIAGVMVFSLLSALL
VYGASGYFFSGPFKVGESLRAEMMASRVALALCIPVIAITSVFAGALMGLERFKLVSAGNLVSSIAMQVLPLLVAYYVGS
NLTGLIFAALFGRAIGLLIAAGGAWLTMLRGQAISVSLAEFRHLFTFGAWILLTMIVGPMMTMADRFVIGGTLGATAVAV
YTVPFQIASRSAMFPYAVSQVLFPRFASDSGERSQERCRSSTVLIAQVYAPMVIGLSCLAAPLLHLWIGTKLDPRSILIG
QIVITGFWANAIAGVPYAYIQARGNPRFTALLHVAELPFYTAALYLLGMNYGLAGVAAAFTLRCAVDCVLLMGAAKLWTR
EMAARLAGPVALVLLSIVAGQMFQGWVGAFLAAFVLGGAGGVLMLVQMPDEVRSQLDKTALARFLPRWTAKAA

Specific function: Could be an O-antigen transporter [H]

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002797 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 50395; Mature: 50395

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVSIVTVPIYLHVIGGERYGALLIAWLLLGYFGQADFGIARAITHRISALGRQSRQQNA
CEEEEEEEEHEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ETLWSGIAGVMVFSLLSALLVYGASGYFFSGPFKVGESLRAEMMASRVALALCIPVIAIT
HHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVFAGALMGLERFKLVSAGNLVSSIAMQVLPLLVAYYVGSNLTGLIFAALFGRAIGLLIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AGGAWLTMLRGQAISVSLAEFRHLFTFGAWILLTMIVGPMMTMADRFVIGGTLGATAVAV
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
YTVPFQIASRSAMFPYAVSQVLFPRFASDSGERSQERCRSSTVLIAQVYAPMVIGLSCLA
EEEHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
APLLHLWIGTKLDPRSILIGQIVITGFWANAIAGVPYAYIQARGNPRFTALLHVAELPFY
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
TAALYLLGMNYGLAGVAAAFTLRCAVDCVLLMGAAKLWTREMAARLAGPVALVLLSIVAG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMFQGWVGAFLAAFVLGGAGGVLMLVQMPDEVRSQLDKTALARFLPRWTAKAA
HHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVVSIVTVPIYLHVIGGERYGALLIAWLLLGYFGQADFGIARAITHRISALGRQSRQQNA
CEEEEEEEEHEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ETLWSGIAGVMVFSLLSALLVYGASGYFFSGPFKVGESLRAEMMASRVALALCIPVIAIT
HHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVFAGALMGLERFKLVSAGNLVSSIAMQVLPLLVAYYVGSNLTGLIFAALFGRAIGLLIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AGGAWLTMLRGQAISVSLAEFRHLFTFGAWILLTMIVGPMMTMADRFVIGGTLGATAVAV
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
YTVPFQIASRSAMFPYAVSQVLFPRFASDSGERSQERCRSSTVLIAQVYAPMVIGLSCLA
EEEHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
APLLHLWIGTKLDPRSILIGQIVITGFWANAIAGVPYAYIQARGNPRFTALLHVAELPFY
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
TAALYLLGMNYGLAGVAAAFTLRCAVDCVLLMGAAKLWTREMAARLAGPVALVLLSIVAG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMFQGWVGAFLAAFVLGGAGGVLMLVQMPDEVRSQLDKTALARFLPRWTAKAA
HHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7507920; 12384590; 12704152 [H]