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The map label for this gene is rfbC [H]

Identifier: 87201243

GI number: 87201243

Start: 3451482

End: 3452753

Strand: Reverse

Name: rfbC [H]

Synonym: Saro_3231

Alternate gene names: 87201243

Gene position: 3452753-3451482 (Counterclockwise)

Preceding gene: 87201244

Following gene: 87201240

Centisome position: 96.94

GC content: 64.39

Gene sequence:

>1272_bases
GTGAGCGGCGCGCTACGGGCATCGATCAAGCGGGTCATCCCGGCGCGACTCAAGCGCCTGATAAAGGACGTGCGCGATCT
GGCGACGCCCCCGCCCATCGATGACGTCGTCCTGGCGGAATATGTCCTAGTGCCCGATGCCTCGGAGGCGCCGCGGCTGA
ACTTCGTGATCTCGAACCTGACACGGGCCACGGCCTTCGGCGGCGTCACCACCGGGATAGACGTCTTTCTCGAACTTGCG
CGGCATCTGTCGCGCAAGACGCCCCTCGACCTGCGCGTCATCATCGCCGAGCCCGATCGCGAGACCGATCTGTCGATCAT
AGCCGAGCGCGCGGGCAGGTTCGGACTCGAGGGTGAGCGGATCGCGTTCCACGCGGTGCGCTCGTCCACCGAGGCCATAC
CGGTGCGCCGCCGCGATGTCTTCGTGTCCTACAGCACCTGGATGACGCTTAACCTGCAGGGCCTGCTTGCCCGGCAGGCC
GCGCATTTCGCCCAGGCGATGAAGCCGCTGGTCTTCCTGATCCAGGAGTATGAGCCCCACTTCTACCCCTTTTCGTCGGC
GCATATGCTCTCGCGCGAGGCATACGACCGGACCGAACGGCTGTGGGGGGTGTTCAACAGCTCAAACCTGCAATGGTATT
TCGAGCAGGTGGGCCATTCGGCGGAGCGGTCGTTCCTGCTCGAGCCGGTCATAAACGACAAGCTCCGGCCCTATCTCGAT
AGCGTCGCGACAAGCGAGCGCCGCAAGCGCATACTTGTCTACGGGCGCCCCGGAATTGCGCGCAACTGCTTTCCCGCCAT
CGTCCGCGGCCTTCGCCGCTGGGTGCGCGATTTTCCGGAGGCGGCCGAATGGGAGGTCGTCTCGGCCGGCACCGCGCATA
AGCCGATTGCGTTGGGGCAGGGGCGGATGCTGGAATCGGTGGGCAAGCTGTCGCTTGAAGAATACGCGGAAATGCTCGTT
TCCAGTTCGGTGGGGCTCAGCCTGATGGCGTCTCCGCACCCAAGCTATCCCCCGCTGGAGATGGCCCACATGGGGCTGCG
GACCATCACCAACGGGTATTTCGGAAAGGATCTCTCGACGTTCCATCCGAACATCCGAAGCGTCGGCAGCATCACCGAAA
AGGCGCTGGCCGACGCGCTGTCCCGGGCTTGTGCCGAACATGGCGCGCCGGTGAACGCGTATCGCAACGAAAGCTACGTG
CGCTCCGATCCTTACCCCTTCGTGCCAGCGCTGTGCGCAGCCATCGCAGAGGAAATCGGCATCGCCCGCTAG

Upstream 100 bases:

>100_bases
ATGAGCGTACCGACTACGAGCGCAAGGCGGCCGAAGCGGCGCCTCACACGCTTGCCAATTCCGAATACCTGATCGTCGTC
GCGCGCAAGGGATGCAAGTC

Downstream 100 bases:

>100_bases
CGCCCCCGCGCACAAGCGGCGAGGGGGCACTGCGCGGGCTTACTGCAAGGCGATGAGCCCGGCGCAATCCGAGGCCCCTC
GGGCCTTGCGGTTCCTGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MSGALRASIKRVIPARLKRLIKDVRDLATPPPIDDVVLAEYVLVPDASEAPRLNFVISNLTRATAFGGVTTGIDVFLELA
RHLSRKTPLDLRVIIAEPDRETDLSIIAERAGRFGLEGERIAFHAVRSSTEAIPVRRRDVFVSYSTWMTLNLQGLLARQA
AHFAQAMKPLVFLIQEYEPHFYPFSSAHMLSREAYDRTERLWGVFNSSNLQWYFEQVGHSAERSFLLEPVINDKLRPYLD
SVATSERRKRILVYGRPGIARNCFPAIVRGLRRWVRDFPEAAEWEVVSAGTAHKPIALGQGRMLESVGKLSLEEYAEMLV
SSSVGLSLMASPHPSYPPLEMAHMGLRTITNGYFGKDLSTFHPNIRSVGSITEKALADALSRACAEHGAPVNAYRNESYV
RSDPYPFVPALCAAIAEEIGIAR

Sequences:

>Translated_423_residues
MSGALRASIKRVIPARLKRLIKDVRDLATPPPIDDVVLAEYVLVPDASEAPRLNFVISNLTRATAFGGVTTGIDVFLELA
RHLSRKTPLDLRVIIAEPDRETDLSIIAERAGRFGLEGERIAFHAVRSSTEAIPVRRRDVFVSYSTWMTLNLQGLLARQA
AHFAQAMKPLVFLIQEYEPHFYPFSSAHMLSREAYDRTERLWGVFNSSNLQWYFEQVGHSAERSFLLEPVINDKLRPYLD
SVATSERRKRILVYGRPGIARNCFPAIVRGLRRWVRDFPEAAEWEVVSAGTAHKPIALGQGRMLESVGKLSLEEYAEMLV
SSSVGLSLMASPHPSYPPLEMAHMGLRTITNGYFGKDLSTFHPNIRSVGSITEKALADALSRACAEHGAPVNAYRNESYV
RSDPYPFVPALCAAIAEEIGIAR
>Mature_422_residues
SGALRASIKRVIPARLKRLIKDVRDLATPPPIDDVVLAEYVLVPDASEAPRLNFVISNLTRATAFGGVTTGIDVFLELAR
HLSRKTPLDLRVIIAEPDRETDLSIIAERAGRFGLEGERIAFHAVRSSTEAIPVRRRDVFVSYSTWMTLNLQGLLARQAA
HFAQAMKPLVFLIQEYEPHFYPFSSAHMLSREAYDRTERLWGVFNSSNLQWYFEQVGHSAERSFLLEPVINDKLRPYLDS
VATSERRKRILVYGRPGIARNCFPAIVRGLRRWVRDFPEAAEWEVVSAGTAHKPIALGQGRMLESVGKLSLEEYAEMLVS
SSVGLSLMASPHPSYPPLEMAHMGLRTITNGYFGKDLSTFHPNIRSVGSITEKALADALSRACAEHGAPVNAYRNESYVR
SDPYPFVPALCAAIAEEIGIAR

Specific function: Involved in O-antigen biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00534 Glycos_transf_1; PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 47188; Mature: 47057

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGALRASIKRVIPARLKRLIKDVRDLATPPPIDDVVLAEYVLVPDASEAPRLNFVISNL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEECCCCCCCCCHHHHHHHH
TRATAFGGVTTGIDVFLELARHLSRKTPLDLRVIIAEPDRETDLSIIAERAGRFGLEGER
HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCC
IAFHAVRSSTEAIPVRRRDVFVSYSTWMTLNLQGLLARQAAHFAQAMKPLVFLIQEYEPH
EEHHHHHCCCCCCCCCHHEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FYPFSSAHMLSREAYDRTERLWGVFNSSNLQWYFEQVGHSAERSFLLEPVINDKLRPYLD
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHEEHHHHHHHHHHHHHH
SVATSERRKRILVYGRPGIARNCFPAIVRGLRRWVRDFPEAAEWEVVSAGTAHKPIALGQ
HHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEECCC
GRMLESVGKLSLEEYAEMLVSSSVGLSLMASPHPSYPPLEMAHMGLRTITNGYFGKDLST
CHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHH
FHPNIRSVGSITEKALADALSRACAEHGAPVNAYRNESYVRSDPYPFVPALCAAIAEEIG
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHC
IAR
CCC
>Mature Secondary Structure 
SGALRASIKRVIPARLKRLIKDVRDLATPPPIDDVVLAEYVLVPDASEAPRLNFVISNL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEECCCCCCCCCHHHHHHHH
TRATAFGGVTTGIDVFLELARHLSRKTPLDLRVIIAEPDRETDLSIIAERAGRFGLEGER
HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCC
IAFHAVRSSTEAIPVRRRDVFVSYSTWMTLNLQGLLARQAAHFAQAMKPLVFLIQEYEPH
EEHHHHHCCCCCCCCCHHEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FYPFSSAHMLSREAYDRTERLWGVFNSSNLQWYFEQVGHSAERSFLLEPVINDKLRPYLD
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHEEHHHHHHHHHHHHHH
SVATSERRKRILVYGRPGIARNCFPAIVRGLRRWVRDFPEAAEWEVVSAGTAHKPIALGQ
HHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEECCC
GRMLESVGKLSLEEYAEMLVSSSVGLSLMASPHPSYPPLEMAHMGLRTITNGYFGKDLST
CHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHH
FHPNIRSVGSITEKALADALSRACAEHGAPVNAYRNESYVRSDPYPFVPALCAAIAEEIG
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHC
IAR
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]