| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87201234
Identifier: 87201234
GI number: 87201234
Start: 3440545
End: 3441090
Strand: Reverse
Name: 87201234
Synonym: Saro_3222
Alternate gene names: NA
Gene position: 3441090-3440545 (Counterclockwise)
Preceding gene: 87201238
Following gene: 87201231
Centisome position: 96.62
GC content: 65.02
Gene sequence:
>546_bases ATGTCCATATCCATTTTCAGCCTTGTCGCGATCGTTCTCTATCTTGCCGTCGCCTATGCTTGCAGCCGTGCGGCGCGGGT TGCGAAGATTGCGCGAAGGCCAGAAACGGAGCGCCGCCGCTGGCTTGCGTTCACAACGTTCTTCGGGGCGCTCGCTGCGT TTCGGGCGTCGAATCTCGAGGAGGCGATCAGATCCGCCCTGCGTGAACAACTCATCGTTCATGGCGAATATTTCGAGCGG TGGAGCCTGCAGGCGCCTGTTGCGGCCGCCGCACTGGTGTTGCTGGCGGCGGGCATCGGTGCCCTGTTCCTCGTCCATCC GGCGCGGCGCGGGCGAGGTCGGCTGGCGGCGTCCATTTTCGTCGCCGACCTTGCGGTGGCTGCACAAGTCGGCCTGGTCA TGCTGCGCGTGATCTCGTTGCACGCGGTCGACGCATTGCTCTACCGCGGCCCGCATCTCAACTGGCTCGTGGACTGTGGT GCCACGTTCGCGGTCGCCTACGCGGCGCTTCGCTACCGCAACCTCCTCAGGGCACCGCGAGGCTGA
Upstream 100 bases:
>100_bases TGCGGTTGCCGCGGGCTAACTGTCCGGACGCGGCAAGGCGCCGGGCGCAACCTCGCGCCTCCCGCCCAGTCCGACCTTTC GATTCCACGACTGCAGGTTC
Downstream 100 bases:
>100_bases GCCGGACCGGCGCCCAGGGGCGGGGACGGACTCAGTCGGCAAGGCAGAGCGCCTTGCGATACGCGGCGATCAACGGGGCG ATCTGGTGCCCCCAATTCAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MSISIFSLVAIVLYLAVAYACSRAARVAKIARRPETERRRWLAFTTFFGALAAFRASNLEEAIRSALREQLIVHGEYFER WSLQAPVAAAALVLLAAGIGALFLVHPARRGRGRLAASIFVADLAVAAQVGLVMLRVISLHAVDALLYRGPHLNWLVDCG ATFAVAYAALRYRNLLRAPRG
Sequences:
>Translated_181_residues MSISIFSLVAIVLYLAVAYACSRAARVAKIARRPETERRRWLAFTTFFGALAAFRASNLEEAIRSALREQLIVHGEYFER WSLQAPVAAAALVLLAAGIGALFLVHPARRGRGRLAASIFVADLAVAAQVGLVMLRVISLHAVDALLYRGPHLNWLVDCG ATFAVAYAALRYRNLLRAPRG >Mature_180_residues SISIFSLVAIVLYLAVAYACSRAARVAKIARRPETERRRWLAFTTFFGALAAFRASNLEEAIRSALREQLIVHGEYFERW SLQAPVAAAALVLLAAGIGALFLVHPARRGRGRLAASIFVADLAVAAQVGLVMLRVISLHAVDALLYRGPHLNWLVDCGA TFAVAYAALRYRNLLRAPRG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19774; Mature: 19642
Theoretical pI: Translated: 11.60; Mature: 11.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISIFSLVAIVLYLAVAYACSRAARVAKIARRPETERRRWLAFTTFFGALAAFRASNLE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHH EAIRSALREQLIVHGEYFERWSLQAPVAAAALVLLAAGIGALFLVHPARRGRGRLAASIF HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH VADLAVAAQVGLVMLRVISLHAVDALLYRGPHLNWLVDCGATFAVAYAALRYRNLLRAPR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC G C >Mature Secondary Structure SISIFSLVAIVLYLAVAYACSRAARVAKIARRPETERRRWLAFTTFFGALAAFRASNLE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHH EAIRSALREQLIVHGEYFERWSLQAPVAAAALVLLAAGIGALFLVHPARRGRGRLAASIF HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH VADLAVAAQVGLVMLRVISLHAVDALLYRGPHLNWLVDCGATFAVAYAALRYRNLLRAPR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC G C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA