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The map label for this gene is yiaD [H]

Identifier: 87201185

GI number: 87201185

Start: 3388263

End: 3388955

Strand: Reverse

Name: yiaD [H]

Synonym: Saro_3173

Alternate gene names: 87201185

Gene position: 3388955-3388263 (Counterclockwise)

Preceding gene: 87201187

Following gene: 87201184

Centisome position: 95.15

GC content: 65.66

Gene sequence:

>693_bases
ATGAAAATTCGTCGCGTACTTATGTCGAGCCTGTGTGCTGTTTCGCTGGTCAGTCTGTCGGCTTGCGTCACCGATCCCAA
CACCGGCGAAAAGAAGGTTTCGCGTACCGCCATCGGCGGTATCGGCGGCGCGCTTGGCGGCGCACTGCTCGGCGGTCTCA
TCGGCGGCAAGACGGGCCGCATCGTCGGTGCCGGCATCGGCGGCGTGGCCGGCGGCGTGATCGGCTACCAGAAGGACAAG
CAGATCCGCGAACTGCGCGAACAGACCGCCGGCACCGGGGTTGACGTGACCGAGACCGACAACGGCCAGGCCATCCTTGT
CAACCTGCCCAACGGCGTCACCTTCGACGTCGACAGCTCCACCGTGAAGCCCGCCTTCGCCACCACGCTCGACCGCGTCG
CGCAGTCGCTGGTGCAGTACCCGAACTCGCTGATCGACGTTTATGGCCACACCGATTCCACCGGCTCGGACGCCTACAAC
CAGGCGCTTTCGGAACGCCGCGCGCGCGCCGTCGCCGACTACCTGATTTCGCGCGGGGTCGGTTATGCGCGCATCCGTAG
CCAGGGCTTCGGTGAATCGCAGCCGATCGCGTCGAACGACACCGAGCAGGGGCGTCAGGCCAACCGCCGCGTCGAGATCA
AGATCGTCCCCATCAGCCAGGATGACGTGAACGCCGCCCGCAGCGGTCAGTAA

Upstream 100 bases:

>100_bases
GTTCGGGAACCGTTCAGCCAAACCCGGCGTATTTCAGTCTGTCAAAGCGGCATCGCGTTGCATAAGGTCGCGTCGGGATG
CTGGTCAAAGGGGACAGGAA

Downstream 100 bases:

>100_bases
GCTTTCCTGCACGGACAATGCGGCGTCGCTCCGGTCGGGAGCGGCGCCGTTTTGCCGTGTTCGGCATGTGATTGGGCGTT
GACCGGGGCCGCCTGCTCCT

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKIRRVLMSSLCAVSLVSLSACVTDPNTGEKKVSRTAIGGIGGALGGALLGGLIGGKTGRIVGAGIGGVAGGVIGYQKDK
QIRELREQTAGTGVDVTETDNGQAILVNLPNGVTFDVDSSTVKPAFATTLDRVAQSLVQYPNSLIDVYGHTDSTGSDAYN
QALSERRARAVADYLISRGVGYARIRSQGFGESQPIASNDTEQGRQANRRVEIKIVPISQDDVNAARSGQ

Sequences:

>Translated_230_residues
MKIRRVLMSSLCAVSLVSLSACVTDPNTGEKKVSRTAIGGIGGALGGALLGGLIGGKTGRIVGAGIGGVAGGVIGYQKDK
QIRELREQTAGTGVDVTETDNGQAILVNLPNGVTFDVDSSTVKPAFATTLDRVAQSLVQYPNSLIDVYGHTDSTGSDAYN
QALSERRARAVADYLISRGVGYARIRSQGFGESQPIASNDTEQGRQANRRVEIKIVPISQDDVNAARSGQ
>Mature_230_residues
MKIRRVLMSSLCAVSLVSLSACVTDPNTGEKKVSRTAIGGIGGALGGALLGGLIGGKTGRIVGAGIGGVAGGVIGYQKDK
QIRELREQTAGTGVDVTETDNGQAILVNLPNGVTFDVDSSTVKPAFATTLDRVAQSLVQYPNSLIDVYGHTDSTGSDAYN
QALSERRARAVADYLISRGVGYARIRSQGFGESQPIASNDTEQGRQANRRVEIKIVPISQDDVNAARSGQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=222, Percent_Identity=45.4954954954955, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI1787191, Length=124, Percent_Identity=37.9032258064516, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788957, Length=68, Percent_Identity=47.0588235294118, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786962, Length=100, Percent_Identity=37, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23950; Mature: 23950

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRRVLMSSLCAVSLVSLSACVTDPNTGEKKVSRTAIGGIGGALGGALLGGLIGGKTGR
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
IVGAGIGGVAGGVIGYQKDKQIRELREQTAGTGVDVTETDNGQAILVNLPNGVTFDVDSS
EEECCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEEEECCCCEEEECCCC
TVKPAFATTLDRVAQSLVQYPNSLIDVYGHTDSTGSDAYNQALSERRARAVADYLISRGV
CCCHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
GYARIRSQGFGESQPIASNDTEQGRQANRRVEIKIVPISQDDVNAARSGQ
CHHHHHHCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCCHHCCCC
>Mature Secondary Structure
MKIRRVLMSSLCAVSLVSLSACVTDPNTGEKKVSRTAIGGIGGALGGALLGGLIGGKTGR
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
IVGAGIGGVAGGVIGYQKDKQIRELREQTAGTGVDVTETDNGQAILVNLPNGVTFDVDSS
EEECCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEEEECCCCEEEECCCC
TVKPAFATTLDRVAQSLVQYPNSLIDVYGHTDSTGSDAYNQALSERRARAVADYLISRGV
CCCHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
GYARIRSQGFGESQPIASNDTEQGRQANRRVEIKIVPISQDDVNAARSGQ
CHHHHHHCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]