| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201172
Identifier: 87201172
GI number: 87201172
Start: 3372723
End: 3373298
Strand: Direct
Name: 87201172
Synonym: Saro_3160
Alternate gene names: NA
Gene position: 3372723-3373298 (Clockwise)
Preceding gene: 87201171
Following gene: 87201173
Centisome position: 94.7
GC content: 67.19
Gene sequence:
>576_bases ATGCGACGCTTGAAAACGATGATCGCCGGGGCCGCCATCGGCCTCTCCTCGCTCGCGCTGGCAGCATGCGACAAGGCCGA CGGTGGTCCGACCGGCGCTGCCAACGAAGCCAGCGCGGAGGGCAGTGGCAGCCTCTACGACGCACTTGGCGATGCGAACG ACCTGTCCTCGACGGCGAGGCTGGTGAAGGCGGCAGGATTGGAAAAGATGTTCGAGGGACAGGGCAGCTACACCCTGTTC GCGCCGACCGACGATGCCATCGCTGCGCTTCCTGAAGCCGACCGCAAGGCGCTGGAAAGCGCCGAGGGCCGCGCCCAGCT TGTCGCGCTGCTGAGCCAGCACATCACGCCGGGCTATGTCGGCAGGACCGACCTCGACCAGGGGCTGGAACGGGGCAAGG GCAAGGTTCAGCTGGCCAGCGTCGGCTCCGCGCCGATCGTCTTGCGCAAGGATGGCTGCGTGCTCGTGCTTGGCGAAGGC GCGGATGCCCCCAAGGTGGTGGGCGAGCCAATCGCGTCGCGGAACGGGATGATCTACCGGATAGACAAGGTACTGCCGGC GCCCGCGGCAAAGTGA
Upstream 100 bases:
>100_bases CGATACAGCGACGGCTACGTCTACGAGGTCGACCCCACGACCCAGCTCGTGCGGGCCGTGATCGAACTGCTAGTCTGACC AGGGCCACGAGGAGCCGTAG
Downstream 100 bases:
>100_bases CGGTTGGAGGCAGGCTGAGGCGATCCGACAAGATTTGCGGCGCATGCCGCACCGGCGCGGCGCGAATCCTGGTTGCGCCG CTTAAGTGATCGGTTAAACT
Product: beta-Ig-H3/fasciclin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 191; Mature: 191
Protein sequence:
>191_residues MRRLKTMIAGAAIGLSSLALAACDKADGGPTGAANEASAEGSGSLYDALGDANDLSSTARLVKAAGLEKMFEGQGSYTLF APTDDAIAALPEADRKALESAEGRAQLVALLSQHITPGYVGRTDLDQGLERGKGKVQLASVGSAPIVLRKDGCVLVLGEG ADAPKVVGEPIASRNGMIYRIDKVLPAPAAK
Sequences:
>Translated_191_residues MRRLKTMIAGAAIGLSSLALAACDKADGGPTGAANEASAEGSGSLYDALGDANDLSSTARLVKAAGLEKMFEGQGSYTLF APTDDAIAALPEADRKALESAEGRAQLVALLSQHITPGYVGRTDLDQGLERGKGKVQLASVGSAPIVLRKDGCVLVLGEG ADAPKVVGEPIASRNGMIYRIDKVLPAPAAK >Mature_191_residues MRRLKTMIAGAAIGLSSLALAACDKADGGPTGAANEASAEGSGSLYDALGDANDLSSTARLVKAAGLEKMFEGQGSYTLF APTDDAIAALPEADRKALESAEGRAQLVALLSQHITPGYVGRTDLDQGLERGKGKVQLASVGSAPIVLRKDGCVLVLGEG ADAPKVVGEPIASRNGMIYRIDKVLPAPAAK
Specific function: Unknown
COG id: COG2335
COG function: function code M; Secreted and surface protein containing fasciclin-like repeats
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAS1 domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000782 [H]
Pfam domain/function: PF02469 Fasciclin [H]
EC number: NA
Molecular weight: Translated: 19432; Mature: 19432
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50213 FAS1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRLKTMIAGAAIGLSSLALAACDKADGGPTGAANEASAEGSGSLYDALGDANDLSSTAR CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHH LVKAAGLEKMFEGQGSYTLFAPTDDAIAALPEADRKALESAEGRAQLVALLSQHITPGYV HHHHHHHHHHHCCCCCEEEEECCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCC GRTDLDQGLERGKGKVQLASVGSAPIVLRKDGCVLVLGEGADAPKVVGEPIASRNGMIYR CCCCHHHHHHCCCCEEEEEECCCCCEEEECCCEEEEECCCCCCCHHHCCCHHCCCCEEEE IDKVLPAPAAK ECCCCCCCCCC >Mature Secondary Structure MRRLKTMIAGAAIGLSSLALAACDKADGGPTGAANEASAEGSGSLYDALGDANDLSSTAR CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHH LVKAAGLEKMFEGQGSYTLFAPTDDAIAALPEADRKALESAEGRAQLVALLSQHITPGYV HHHHHHHHHHHCCCCCEEEEECCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCC GRTDLDQGLERGKGKVQLASVGSAPIVLRKDGCVLVLGEGADAPKVVGEPIASRNGMIYR CCCCHHHHHHCCCCEEEEEECCCCCEEEECCCEEEEECCCCCCCHHHCCCHHCCCCEEEE IDKVLPAPAAK ECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]