| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201115
Identifier: 87201115
GI number: 87201115
Start: 3320807
End: 3321937
Strand: Reverse
Name: 87201115
Synonym: Saro_3103
Alternate gene names: NA
Gene position: 3321937-3320807 (Counterclockwise)
Preceding gene: 87201116
Following gene: 87201113
Centisome position: 93.27
GC content: 66.49
Gene sequence:
>1131_bases GTGACCCTTACAGCGCGCATCCACAAGGCCGTTTCCGAAATTCCGGCAGAGGACTGGGACCGCCTTGCCGGACCGGGCAA TCCCTTCGTTTCGCACACTTTTCTGGCGTTGCTGGAAGAGTCGGGCTCGGTTGGCGGCCGCTCCGGATGGTCGCCCCTGC CGATCGTGATCGACGACGGGAATGGGCGACCGGCGGCGGCCTTGCCTGCCTATCTGAAAAGCCACAGCCAGGGCGAATAC GTGTTCGACCATTCGTGGGCGGACGCCTGGCAGAGGGCGGGCGGCAGCTATTACCCCAAGCTCCAGATCTGCGCGCCGTT CACCCCGGCCACGGGGCCGCGCCTGCTGCTTGGCGACCGTCCCGACCTTGCCGGCCCGCTGCTGCGCGCCGCGGAGCAGT TGTGCGAGGGCAACGAGCTGTCCTCGGCCCACGCGACGTTCGTCGAACCGGCGCAGTTGCCGATGTTCGAGGCCGCCGGC TGGTTGCCGAGAAGCGACATCCAGTTCCACTGGGAGAATCGCGGCTATGCCAGCTTTGCCGATTTTCTCGGCGCGTTGTC TTCGGAGAAGCGCAAGAACCTGCGCAAGGAACGTGCCCGCGCCCAGGACGGGGTGGAAATCCGCCAGCTTACCGGCGCGG ACATTCGCCCCGAGCATTGGGATGCCTTCTGGCTGTTCTATCAGGACACCGGCGCACGCAAGTGGGGACGCCCGTACCTG ACGCGCCGCGCGTTCGACCTGATTGGCGAGCGGATGGCGGACAAGGTCCTGCTGGTGCTGGCGTTTCTCGATGGCGAGCC GGTGGCGGGGGCGCTCAACTTCATCGGCGCGCAGGCGCTTTACGGGCGATACTGGGGCGCGCTGGTCGAGAAGCCCTTCC TGCATTTCGAGCTTTGCTATTACCAGGCCATCGACGCCGCGATCCGGCTTGGGCTGGATCGGGTGGAGGCGGGTGCGCAA GGCGGCCACAAGCTGGCGCGGGGCTATGAGCCGGTCAGGACGTGGTCCGCGCACTTCATCGCGGACCCCGGATTCCGCCG GGCGGTATCTGATTTTCTGGAACGGGAGCGTGCCGGCATCGCGCAGGACCAGATGCACCTGGGCGAGCGGACTCCGTTCC GGAAGGGATAA
Upstream 100 bases:
>100_bases CTCACCTGGACAGTGCGGTCGGCAGAACTCGCCGCGCGCGCGGCGGACTGTGCCGATGGACCTATTGCCGAAGGCGCCGG CGTCGGCGCATGATCGCGGC
Downstream 100 bases:
>100_bases ACGGGAAGCGTCAGGCGGCGGCGCGACCGGCGCGGAGCCATTCGCGGGCGCGGCGCTGGGCCTCGGCGATTTCGCGGGCA GTCATGTCGTCCGCCACGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 376; Mature: 375
Protein sequence:
>376_residues MTLTARIHKAVSEIPAEDWDRLAGPGNPFVSHTFLALLEESGSVGGRSGWSPLPIVIDDGNGRPAAALPAYLKSHSQGEY VFDHSWADAWQRAGGSYYPKLQICAPFTPATGPRLLLGDRPDLAGPLLRAAEQLCEGNELSSAHATFVEPAQLPMFEAAG WLPRSDIQFHWENRGYASFADFLGALSSEKRKNLRKERARAQDGVEIRQLTGADIRPEHWDAFWLFYQDTGARKWGRPYL TRRAFDLIGERMADKVLLVLAFLDGEPVAGALNFIGAQALYGRYWGALVEKPFLHFELCYYQAIDAAIRLGLDRVEAGAQ GGHKLARGYEPVRTWSAHFIADPGFRRAVSDFLERERAGIAQDQMHLGERTPFRKG
Sequences:
>Translated_376_residues MTLTARIHKAVSEIPAEDWDRLAGPGNPFVSHTFLALLEESGSVGGRSGWSPLPIVIDDGNGRPAAALPAYLKSHSQGEY VFDHSWADAWQRAGGSYYPKLQICAPFTPATGPRLLLGDRPDLAGPLLRAAEQLCEGNELSSAHATFVEPAQLPMFEAAG WLPRSDIQFHWENRGYASFADFLGALSSEKRKNLRKERARAQDGVEIRQLTGADIRPEHWDAFWLFYQDTGARKWGRPYL TRRAFDLIGERMADKVLLVLAFLDGEPVAGALNFIGAQALYGRYWGALVEKPFLHFELCYYQAIDAAIRLGLDRVEAGAQ GGHKLARGYEPVRTWSAHFIADPGFRRAVSDFLERERAGIAQDQMHLGERTPFRKG >Mature_375_residues TLTARIHKAVSEIPAEDWDRLAGPGNPFVSHTFLALLEESGSVGGRSGWSPLPIVIDDGNGRPAAALPAYLKSHSQGEYV FDHSWADAWQRAGGSYYPKLQICAPFTPATGPRLLLGDRPDLAGPLLRAAEQLCEGNELSSAHATFVEPAQLPMFEAAGW LPRSDIQFHWENRGYASFADFLGALSSEKRKNLRKERARAQDGVEIRQLTGADIRPEHWDAFWLFYQDTGARKWGRPYLT RRAFDLIGERMADKVLLVLAFLDGEPVAGALNFIGAQALYGRYWGALVEKPFLHFELCYYQAIDAAIRLGLDRVEAGAQG GHKLARGYEPVRTWSAHFIADPGFRRAVSDFLERERAGIAQDQMHLGERTPFRKG
Specific function: Unknown
COG id: COG3146
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41834; Mature: 41702
Theoretical pI: Translated: 6.92; Mature: 6.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLTARIHKAVSEIPAEDWDRLAGPGNPFVSHTFLALLEESGSVGGRSGWSPLPIVIDDG CCCHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECC NGRPAAALPAYLKSHSQGEYVFDHSWADAWQRAGGSYYPKLQICAPFTPATGPRLLLGDR CCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCC PDLAGPLLRAAEQLCEGNELSSAHATFVEPAQLPMFEAAGWLPRSDIQFHWENRGYASFA CCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHCCCCCCCCCEEEECCCCHHHHH DFLGALSSEKRKNLRKERARAQDGVEIRQLTGADIRPEHWDAFWLFYQDTGARKWGRPYL HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCHHH TRRAFDLIGERMADKVLLVLAFLDGEPVAGALNFIGAQALYGRYWGALVEKPFLHFELCY HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH YQAIDAAIRLGLDRVEAGAQGGHKLARGYEPVRTWSAHFIADPGFRRAVSDFLERERAGI HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHCCHHHCCCCHHHHHHHHHHHHHHCCC AQDQMHLGERTPFRKG CHHHHHCCCCCCCCCC >Mature Secondary Structure TLTARIHKAVSEIPAEDWDRLAGPGNPFVSHTFLALLEESGSVGGRSGWSPLPIVIDDG CCHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECC NGRPAAALPAYLKSHSQGEYVFDHSWADAWQRAGGSYYPKLQICAPFTPATGPRLLLGDR CCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCC PDLAGPLLRAAEQLCEGNELSSAHATFVEPAQLPMFEAAGWLPRSDIQFHWENRGYASFA CCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHCCCCCCCCCEEEECCCCHHHHH DFLGALSSEKRKNLRKERARAQDGVEIRQLTGADIRPEHWDAFWLFYQDTGARKWGRPYL HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCHHH TRRAFDLIGERMADKVLLVLAFLDGEPVAGALNFIGAQALYGRYWGALVEKPFLHFELCY HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH YQAIDAAIRLGLDRVEAGAQGGHKLARGYEPVRTWSAHFIADPGFRRAVSDFLERERAGI HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHCCHHHCCCCHHHHHHHHHHHHHHCCC AQDQMHLGERTPFRKG CHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA