| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201014
Identifier: 87201014
GI number: 87201014
Start: 3218729
End: 3219550
Strand: Reverse
Name: 87201014
Synonym: Saro_3002
Alternate gene names: NA
Gene position: 3219550-3218729 (Counterclockwise)
Preceding gene: 87201015
Following gene: 87201013
Centisome position: 90.4
GC content: 62.65
Gene sequence:
>822_bases ATGGCAGACGAAGCCGAGGACGTGCTTGAACTGGACGGCGAACAGGCAATCGAGCCTGAGGACGTAGAGGAACAGCAGAC CGAAGCCGCAGCCGACGAAGCCGGGGACGATGACGAGGACGTTATCGGCTTTGGCGAACCGGCTGACGAAGAGGGGGCAG CGCCAGCCCCGGAAAGCAGCGTCATCCGCGAATTGCGGCAGGCGAACCGTGAACTGGCGAAGAAACTACACAAGCTGGAA CGCGGGCAGCAGCCGCAGCGCATCGAGGTAGGCGAGAAGCCGACCCTTGCTGCGTGTGACTACGATGAAGACCGGTTCGA GGCCGAACTTGACGCATGGAAGCAGCGCAAGGCGGAAGCGGATCGATCCGAAACGGAAGCGCAGGAGCGGGCGAAGGCAG AGCAGGAAGCATGGAGGGCTCGCGCGGACAACTACACCGCCGATAAGTCCAAGCTGCGTGTTCCTGACTACGCAAGTGCC GAGGACGAGGTGTTTTCCGCCCTGTCCGAACAGCACCAGGCGCTGATCCTGATGACCGAGAAGCCCGCAGCGCTGGTTTA CGCGCTGTCTCGCGACCCGGCCAAGCTGGAGCAACTTTCCAAACTCGACCTCGCTCGTGCCGCAATGCTGGTTGGCAAGC TGGAGGACAAGGTGACCGTGACCACCAAACGCAAACTCCCGCAGCCCGACCGTCCGATCCGTGGGGATGCCCCGGTGTCG GCGGCATCTGCGGACAAGGAACTCGCAAGGCTCGAAAAGGAAGCTGAACGCACCGGCAATCGCACTGCGCTGATCGCCTA TCGCAAGAAGCTGCGGGCCTGA
Upstream 100 bases:
>100_bases GCGGCGTAAGACCCGTAAAATACCGTCAAAGCCTGCCTCAACCTATCCTCGCGGCCATTCGGCAACCGCTGGGCCGTGAA CCGGTGAGGAAAGGATCGAG
Downstream 100 bases:
>100_bases AATCCACCGTTTCAGGAAGGTTTTGACACATGGCTACTTCGTTCACCAAGCAGGAACAGGTGATGTTCGACAACGTCATC GAGGGTTTCGATGACATGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 273; Mature: 272
Protein sequence:
>273_residues MADEAEDVLELDGEQAIEPEDVEEQQTEAAADEAGDDDEDVIGFGEPADEEGAAPAPESSVIRELRQANRELAKKLHKLE RGQQPQRIEVGEKPTLAACDYDEDRFEAELDAWKQRKAEADRSETEAQERAKAEQEAWRARADNYTADKSKLRVPDYASA EDEVFSALSEQHQALILMTEKPAALVYALSRDPAKLEQLSKLDLARAAMLVGKLEDKVTVTTKRKLPQPDRPIRGDAPVS AASADKELARLEKEAERTGNRTALIAYRKKLRA
Sequences:
>Translated_273_residues MADEAEDVLELDGEQAIEPEDVEEQQTEAAADEAGDDDEDVIGFGEPADEEGAAPAPESSVIRELRQANRELAKKLHKLE RGQQPQRIEVGEKPTLAACDYDEDRFEAELDAWKQRKAEADRSETEAQERAKAEQEAWRARADNYTADKSKLRVPDYASA EDEVFSALSEQHQALILMTEKPAALVYALSRDPAKLEQLSKLDLARAAMLVGKLEDKVTVTTKRKLPQPDRPIRGDAPVS AASADKELARLEKEAERTGNRTALIAYRKKLRA >Mature_272_residues ADEAEDVLELDGEQAIEPEDVEEQQTEAAADEAGDDDEDVIGFGEPADEEGAAPAPESSVIRELRQANRELAKKLHKLER GQQPQRIEVGEKPTLAACDYDEDRFEAELDAWKQRKAEADRSETEAQERAKAEQEAWRARADNYTADKSKLRVPDYASAE DEVFSALSEQHQALILMTEKPAALVYALSRDPAKLEQLSKLDLARAAMLVGKLEDKVTVTTKRKLPQPDRPIRGDAPVSA ASADKELARLEKEAERTGNRTALIAYRKKLRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30350; Mature: 30219
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADEAEDVLELDGEQAIEPEDVEEQQTEAAADEAGDDDEDVIGFGEPADEEGAAPAPESS CCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCHHH VIRELRQANRELAKKLHKLERGQQPQRIEVGEKPTLAACDYDEDRFEAELDAWKQRKAEA HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHC DRSETEAQERAKAEQEAWRARADNYTADKSKLRVPDYASAEDEVFSALSEQHQALILMTE CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEC KPAALVYALSRDPAKLEQLSKLDLARAAMLVGKLEDKVTVTTKRKLPQPDRPIRGDAPVS CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCCCCCCCCCCCCC AASADKELARLEKEAERTGNRTALIAYRKKLRA HHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCC >Mature Secondary Structure ADEAEDVLELDGEQAIEPEDVEEQQTEAAADEAGDDDEDVIGFGEPADEEGAAPAPESS CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCHHH VIRELRQANRELAKKLHKLERGQQPQRIEVGEKPTLAACDYDEDRFEAELDAWKQRKAEA HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHC DRSETEAQERAKAEQEAWRARADNYTADKSKLRVPDYASAEDEVFSALSEQHQALILMTE CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEC KPAALVYALSRDPAKLEQLSKLDLARAAMLVGKLEDKVTVTTKRKLPQPDRPIRGDAPVS CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCCCCCCCCCCCCC AASADKELARLEKEAERTGNRTALIAYRKKLRA HHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA