| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200898
Identifier: 87200898
GI number: 87200898
Start: 3106835
End: 3107800
Strand: Reverse
Name: 87200898
Synonym: Saro_2885
Alternate gene names: NA
Gene position: 3107800-3106835 (Counterclockwise)
Preceding gene: 87200899
Following gene: 87200897
Centisome position: 87.26
GC content: 70.08
Gene sequence:
>966_bases ATGGCAGAGAGCTTGAAAACTTCGCCGGAACTGGCGGGCTTCACGGTCGACGAATGGCAGGCTCTCATGGGGCACGCGGC GCCCTTTGCCGCATTGCGGGGCGAGACGCTGTTCCGCCAGGGCGATCCGCCCAGCGCTCTCTACCTTGTCGGCGAGGGCC TTCTCGAGATCGAGACGCGCTTGCCCGGCGACGAGGCCGCCGTGATCAGCCGGATCGAGCCGGGGCAGATGGTCGGCGAA TTCGCCTTGCTCGACGATGGCCCCCGCTCGGCCAATGTGCGCGCGGTCGATGCTTCCGCCGGGTTCGTCATCGCGCGCGA CCGCTTCCGTGCCCTCCTGGCCGATGGATCACCCTGGGCATTCAGGCTCGGCACTGCCCTGCGTCGTCTCGTGGCGGCAC GGACGCGCGCGACGCTTGAGCGGATCGTGGCCGAGGGCCTGTTCGATCCGCTGGGCTTGCGCCGCATTGCCTCTGGTCCC CGACTCTCCGGAATGCCAGGCACAGATGTATCGGAACTGCTGGCGGGCCTCCCCCGGCTGGCGGGATGCGAGGGCATGGC CGAAGCTGGCCAGCTGGAACTGGCCCCCGCGGGGAGCACCATCGCCGCGCCGAACGAGCCCCAGGACGGCTTGCGCGTGG TGCTGCGCGGCGCGGTGCGGGCGGCGATCCCGCGCGGGGCGATGCAGGAACAGATTTTCGTGTTCGGCCCCGGCTGCTTC GTCGGCCTGACCGGATACAGCGACGGAGGTGGCCAGCCGTTGCTCGTCTCGGCGGCCGAGGAGGCGCTGGTGCTGCATCT TCGCGGCGACGACCTTGTCCGCGCGGCAGAGACGGCAGCGACCTGGTATCCGCCGCTGCTCCTGGCGATGGGCCGCCAAC TCGTGCAGGACCAGCGCAAGGCGAACCGCCATCTTGGCCGCTCGCTCGCGCTGCTGCGCTTCAACCATGCGGGGGAGCCT GCCTGA
Upstream 100 bases:
>100_bases GGACCAGTTGCAGGCGCTCTGCGAAGCCGATTGACGGGCGTCTACACCGCGCGCAAACTCATTGAAAACACAGGGTCGCG GCTCTTGGAGAGGGGCAGCG
Downstream 100 bases:
>100_bases TGTGCCGCATTCTCGGCTATCTCGGCACGCCGGTCCTGCTGGAGGACCTGCTTTATGCGCCCGATTCCTCGCTGCTGAAC CAGACCATCGGCGCGCAGAT
Product: cyclic nucleotide-binding protein domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 321; Mature: 320
Protein sequence:
>321_residues MAESLKTSPELAGFTVDEWQALMGHAAPFAALRGETLFRQGDPPSALYLVGEGLLEIETRLPGDEAAVISRIEPGQMVGE FALLDDGPRSANVRAVDASAGFVIARDRFRALLADGSPWAFRLGTALRRLVAARTRATLERIVAEGLFDPLGLRRIASGP RLSGMPGTDVSELLAGLPRLAGCEGMAEAGQLELAPAGSTIAAPNEPQDGLRVVLRGAVRAAIPRGAMQEQIFVFGPGCF VGLTGYSDGGGQPLLVSAAEEALVLHLRGDDLVRAAETAATWYPPLLLAMGRQLVQDQRKANRHLGRSLALLRFNHAGEP A
Sequences:
>Translated_321_residues MAESLKTSPELAGFTVDEWQALMGHAAPFAALRGETLFRQGDPPSALYLVGEGLLEIETRLPGDEAAVISRIEPGQMVGE FALLDDGPRSANVRAVDASAGFVIARDRFRALLADGSPWAFRLGTALRRLVAARTRATLERIVAEGLFDPLGLRRIASGP RLSGMPGTDVSELLAGLPRLAGCEGMAEAGQLELAPAGSTIAAPNEPQDGLRVVLRGAVRAAIPRGAMQEQIFVFGPGCF VGLTGYSDGGGQPLLVSAAEEALVLHLRGDDLVRAAETAATWYPPLLLAMGRQLVQDQRKANRHLGRSLALLRFNHAGEP A >Mature_320_residues AESLKTSPELAGFTVDEWQALMGHAAPFAALRGETLFRQGDPPSALYLVGEGLLEIETRLPGDEAAVISRIEPGQMVGEF ALLDDGPRSANVRAVDASAGFVIARDRFRALLADGSPWAFRLGTALRRLVAARTRATLERIVAEGLFDPLGLRRIASGPR LSGMPGTDVSELLAGLPRLAGCEGMAEAGQLELAPAGSTIAAPNEPQDGLRVVLRGAVRAAIPRGAMQEQIFVFGPGCFV GLTGYSDGGGQPLLVSAAEEALVLHLRGDDLVRAAETAATWYPPLLLAMGRQLVQDQRKANRHLGRSLALLRFNHAGEPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33940; Mature: 33809
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: PS00889 CNMP_BINDING_2 ; PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAESLKTSPELAGFTVDEWQALMGHAAPFAALRGETLFRQGDPPSALYLVGEGLLEIETR CCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCHHHCCCCCCCEEEEECCCEEEEECC LPGDEAAVISRIEPGQMVGEFALLDDGPRSANVRAVDASAGFVIARDRFRALLADGSPWA CCCCHHHHHCCCCCHHHHHEEEEECCCCCCCCEEEEECCCCEEEEHHHHHHHHCCCCCHH FRLGTALRRLVAARTRATLERIVAEGLFDPLGLRRIASGPRLSGMPGTDVSELLAGLPRL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHH AGCEGMAEAGQLELAPAGSTIAAPNEPQDGLRVVLRGAVRAAIPRGAMQEQIFVFGPGCF CCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCE VGLTGYSDGGGQPLLVSAAEEALVLHLRGDDLVRAAETAATWYPPLLLAMGRQLVQDQRK EEECCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANRHLGRSLALLRFNHAGEPA HHHHHHHHEEEEEECCCCCCC >Mature Secondary Structure AESLKTSPELAGFTVDEWQALMGHAAPFAALRGETLFRQGDPPSALYLVGEGLLEIETR CCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCHHHCCCCCCCEEEEECCCEEEEECC LPGDEAAVISRIEPGQMVGEFALLDDGPRSANVRAVDASAGFVIARDRFRALLADGSPWA CCCCHHHHHCCCCCHHHHHEEEEECCCCCCCCEEEEECCCCEEEEHHHHHHHHCCCCCHH FRLGTALRRLVAARTRATLERIVAEGLFDPLGLRRIASGPRLSGMPGTDVSELLAGLPRL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHH AGCEGMAEAGQLELAPAGSTIAAPNEPQDGLRVVLRGAVRAAIPRGAMQEQIFVFGPGCF CCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCE VGLTGYSDGGGQPLLVSAAEEALVLHLRGDDLVRAAETAATWYPPLLLAMGRQLVQDQRK EEECCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANRHLGRSLALLRFNHAGEPA HHHHHHHHEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA