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The map label for this gene is abgR [H]

Identifier: 87200829

GI number: 87200829

Start: 3039664

End: 3040815

Strand: Reverse

Name: abgR [H]

Synonym: Saro_2816

Alternate gene names: 87200829

Gene position: 3040815-3039664 (Counterclockwise)

Preceding gene: 87200836

Following gene: 87200828

Centisome position: 85.38

GC content: 71.88

Gene sequence:

>1152_bases
ATGGCCCTGCACGCGATCAACATCAGGCACATCGCCGCCTTCGCCGCAACGGTGCGCCACGGCAGCGTGACGCGGGCGGC
GCGGGCGGTGAACCTGACACAGCCGGCGCTGACCCAGGCCATCGCGCGGCTGGAGGCTGACCTCGGCTGCGCGCTGTTCG
AGCGCGGGCCCGCGGGCATGGCGCCGACCGAGCCCGCGCTGCTGCTGGCGCCGCGTGCCGAGGCCGCGATTGCCCATGTC
GGTTCGCCGAGGGTGACGGGAACGCAGGTGCGGGCCTTTCTCGCGCTGGCTCGTGCAGGGTCCTATGCCGTGGCGGCGGA
GGCGACGGGGCTGTCGTCGGCATCCTTGCACCGTGCGGTGGCGGATCTTTCGGTGGCGCTGGGGCAGCGGCTGGTGGACC
GGCGCGGGCGTTCAGTCATGCTGACGCCAGCGGGCGAGCGGCGAGCACGCGGGTTCGGCCTTGCCATGGCGGAACTGCGC
TCCGGCCTTGCCGAAGTTGCTGCGTGGCAGGGCAAGGCGGCGGGCCGCGTCGTCGTGGGAGCCATGCCGCTCAGCAGGGC
GCGGTGGCTGCCCGCGACGATCCTGCGCTTCGCCGCCGCCTTTCCCGGAGTGGACGTGGCGGTGGTGGAAGGGAGCCACG
CCGAGCTTTCCGGGCCGCTGCGCGATGGCGAAGTGGACCTGATGCTCGGCGCGCTTCGCGATGCGTCTTCGCTCGATGAC
CTGCGGCAAGAGGCGGTGTTCGAGGATCAGCCTGCGCTGGTAATGCGCAGCGGGCATCCCTTGCTGACGGGCGCGGTGGA
TGGGGCGGCGCTGGCGCGCTTTCCGTGGATACTACCCGCCAGCGACACGCCGCTGCGGCACTACTGGGAAGGCATGATGC
GCTCCGCCGGGGCCGAGCCGCCGCACGTGGGGATCGAGTGCGGATCGGTGCTGACGGTTCGGCAATTGCTGCTGGGATCG
GATGCGCTGACGCTGCTTTCCCCGGCGCAACTGGCGGTGGAACTGGATGCGGGCGTCCTTGCCACGCTGCCGCCGCCGGT
GCCGGTCATGCGGACCATCGGCATCACTACGCGCGAGGGTTGGCGGCCGACCGCGCCGCAGGCGGCCTTCGCGGCCCTCC
TGCGCGAAGTGGCCGCAGAAGGCTTTGCATAA

Upstream 100 bases:

>100_bases
CTCCCGATGAAAGATCTTCGCGCGTTCCATGGAACTGCGGACCGCAGGGAACCAATGCATTGTTTGCCCCGGCCCATAAG
GAAATGCTAAGTGATCAGGC

Downstream 100 bases:

>100_bases
ATTTATACCTTGGGCGATGTTTGCATTTGTTCCTTTGGCGCGGCCGACGCAGGACCGCTGCCATGGAGAGCGTTCCTGAG
TTCACAATCGCCCTGATCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MALHAINIRHIAAFAATVRHGSVTRAARAVNLTQPALTQAIARLEADLGCALFERGPAGMAPTEPALLLAPRAEAAIAHV
GSPRVTGTQVRAFLALARAGSYAVAAEATGLSSASLHRAVADLSVALGQRLVDRRGRSVMLTPAGERRARGFGLAMAELR
SGLAEVAAWQGKAAGRVVVGAMPLSRARWLPATILRFAAAFPGVDVAVVEGSHAELSGPLRDGEVDLMLGALRDASSLDD
LRQEAVFEDQPALVMRSGHPLLTGAVDGAALARFPWILPASDTPLRHYWEGMMRSAGAEPPHVGIECGSVLTVRQLLLGS
DALTLLSPAQLAVELDAGVLATLPPPVPVMRTIGITTREGWRPTAPQAAFAALLREVAAEGFA

Sequences:

>Translated_383_residues
MALHAINIRHIAAFAATVRHGSVTRAARAVNLTQPALTQAIARLEADLGCALFERGPAGMAPTEPALLLAPRAEAAIAHV
GSPRVTGTQVRAFLALARAGSYAVAAEATGLSSASLHRAVADLSVALGQRLVDRRGRSVMLTPAGERRARGFGLAMAELR
SGLAEVAAWQGKAAGRVVVGAMPLSRARWLPATILRFAAAFPGVDVAVVEGSHAELSGPLRDGEVDLMLGALRDASSLDD
LRQEAVFEDQPALVMRSGHPLLTGAVDGAALARFPWILPASDTPLRHYWEGMMRSAGAEPPHVGIECGSVLTVRQLLLGS
DALTLLSPAQLAVELDAGVLATLPPPVPVMRTIGITTREGWRPTAPQAAFAALLREVAAEGFA
>Mature_382_residues
ALHAINIRHIAAFAATVRHGSVTRAARAVNLTQPALTQAIARLEADLGCALFERGPAGMAPTEPALLLAPRAEAAIAHVG
SPRVTGTQVRAFLALARAGSYAVAAEATGLSSASLHRAVADLSVALGQRLVDRRGRSVMLTPAGERRARGFGLAMAELRS
GLAEVAAWQGKAAGRVVVGAMPLSRARWLPATILRFAAAFPGVDVAVVEGSHAELSGPLRDGEVDLMLGALRDASSLDDL
RQEAVFEDQPALVMRSGHPLLTGAVDGAALARFPWILPASDTPLRHYWEGMMRSAGAEPPHVGIECGSVLTVRQLLLGSD
ALTLLSPAQLAVELDAGVLATLPPPVPVMRTIGITTREGWRPTAPQAAFAALLREVAAEGFA

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=265, Percent_Identity=30.188679245283, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1789506, Length=293, Percent_Identity=25.5972696245734, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI87081904, Length=265, Percent_Identity=25.6603773584906, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI157672245, Length=296, Percent_Identity=25.6756756756757, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788748, Length=161, Percent_Identity=27.9503105590062, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 39909; Mature: 39777

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALHAINIRHIAAFAATVRHGSVTRAARAVNLTQPALTQAIARLEADLGCALFERGPAGM
CCEEEEHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHCCCCCCC
APTEPALLLAPRAEAAIAHVGSPRVTGTQVRAFLALARAGSYAVAAEATGLSSASLHRAV
CCCCCCEEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH
ADLSVALGQRLVDRRGRSVMLTPAGERRARGFGLAMAELRSGLAEVAAWQGKAAGRVVVG
HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
AMPLSRARWLPATILRFAAAFPGVDVAVVEGSHAELSGPLRDGEVDLMLGALRDASSLDD
CCCHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHEEEHHHHCHHHHHH
LRQEAVFEDQPALVMRSGHPLLTGAVDGAALARFPWILPASDTPLRHYWEGMMRSAGAEP
HHHHHHCCCCCCEEEECCCCEEEECCCCHHHHHCCEEECCCCCCHHHHHHHHHHHCCCCC
PHVGIECGSVLTVRQLLLGSDALTLLSPAQLAVELDAGVLATLPPPVPVMRTIGITTREG
CCCCCCCCHHHHHHHHHHCCCHHHHCCCCCEEEEECCCEEEECCCCCCHHHHCCCCCCCC
WRPTAPQAAFAALLREVAAEGFA
CCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALHAINIRHIAAFAATVRHGSVTRAARAVNLTQPALTQAIARLEADLGCALFERGPAGM
CEEEEHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHCCCCCCC
APTEPALLLAPRAEAAIAHVGSPRVTGTQVRAFLALARAGSYAVAAEATGLSSASLHRAV
CCCCCCEEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH
ADLSVALGQRLVDRRGRSVMLTPAGERRARGFGLAMAELRSGLAEVAAWQGKAAGRVVVG
HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
AMPLSRARWLPATILRFAAAFPGVDVAVVEGSHAELSGPLRDGEVDLMLGALRDASSLDD
CCCHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHEEEHHHHCHHHHHH
LRQEAVFEDQPALVMRSGHPLLTGAVDGAALARFPWILPASDTPLRHYWEGMMRSAGAEP
HHHHHHCCCCCCEEEECCCCEEEECCCCHHHHHCCEEECCCCCCHHHHHHHHHHHCCCCC
PHVGIECGSVLTVRQLLLGSDALTLLSPAQLAVELDAGVLATLPPPVPVMRTIGITTREG
CCCCCCCCHHHHHHHHHHCCCHHHHCCCCCEEEEECCCEEEECCCCCCHHHHCCCCCCCC
WRPTAPQAAFAALLREVAAEGFA
CCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]